View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_high_38 (Length: 428)
Name: NF1149_high_38
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_high_38 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 30 - 425
Target Start/End: Original strand, 29639767 - 29640162
Alignment:
| Q |
30 |
gagctatggggaaacaaactcacgaacgatggtttaattgctatttttgatggttgtcctcacctcgaatctcttgatgttcgtatgtgttacaatctag |
129 |
Q |
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| T |
29639767 |
gagctatggggaaacaaactcacgaacgatggtttaattgctatttttgatggttgtccttacctcgaatctcttgatgttcgtatgtgttacaatctag |
29639866 |
T |
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| Q |
130 |
ttattcatggaaatttggcgaaaagatgttttgaaaattctagggtgaaatattttaggtatccaaatgagtatataaatggatatgataatgctgatga |
229 |
Q |
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| T |
29639867 |
ttattcatggaaatttggcgaaaagatgttttgaaaattctagggtgaaatattttaggtatccaaatgagtatataaatggatatgataatgctgatga |
29639966 |
T |
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| Q |
230 |
tgatgattttgtttatgagttttattgcgaatgccgtgtcaaaggtagcaaacgaatgaagaggaagttcacacacatgaatttttataagtttcattaa |
329 |
Q |
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| T |
29639967 |
tgatgattttgtttatgagttttattgcgaatgccgtgtcaaaggtagcaaacgaatgaagaggaagttcacacacatgaatttttataagtttcattaa |
29640066 |
T |
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| Q |
330 |
atgttgttcttagtttaagtgctattccgataggcatggatcaattgaagagaagcactgttgttggttatgttttgaaggaatattgttggagat |
425 |
Q |
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| T |
29640067 |
atgttgttcttagtttaagtgctattctgataggcatggatcaattgaagagaagcactgttgttggggatgttttgaaggaattttgttggagat |
29640162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 30 - 424
Target Start/End: Original strand, 29647788 - 29648180
Alignment:
| Q |
30 |
gagctatggggaaacaaactcacgaacgatggtttaattgctatttttgatggttgtcctcacctcgaatctcttgatgttcgtatgtgttacaatctag |
129 |
Q |
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| T |
29647788 |
gagctttggggaaacaaactcaccaatgatggtctaattgctatccttgatggttgtccttaccttgaatctcttgatgttcgaatgtgctacaatctag |
29647887 |
T |
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| Q |
130 |
ttattcatggaaatttggcgaaaagatgttttgaaaattctagggtgaaatattttaggtatccaaatgagtatataaatggatatgataatgctgatga |
229 |
Q |
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||||||||||||||||||||||||| |||||||| ||| ||||| | ||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
29647888 |
ttattcatggaaatttggcgaaaaggtgttttgagaatactaggataaaatattttaggtatccaactgagtatataaatggatatgataatgatgatga |
29647987 |
T |
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| Q |
230 |
tgatgattttgtttatgagttttattgcgaatgccgtgtcaaaggtagcaaacgaatgaagaggaagttcacacacatgaatttttataagtttcattaa |
329 |
Q |
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| T |
29647988 |
tgatgattttgtttacgagttttattgcgattgtcgtttcataggtagcaaaggaatgaagaggaagctcacagacatgaatttttataagtttcattaa |
29648087 |
T |
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| Q |
330 |
atgttgttcttag-tttaagtgctattccgataggcatggatcaattgaagagaagcactgttgttggttatgttttgaaggaatattgttggaga |
424 |
Q |
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| T |
29648088 |
cttttgttcttagatttaagtgctattctaaaaggcatggatcatttgaagagaatcactactgttg---atgttttgaaggaattttgttggaga |
29648180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 106
Target Start/End: Original strand, 6046842 - 6046880
Alignment:
| Q |
68 |
tgctatttttgatggttgtcctcacctcgaatctcttga |
106 |
Q |
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| T |
6046842 |
tgctattcttgatggttgtcctcaccttgaatctcttga |
6046880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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