View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1149_high_4 (Length: 741)
Name: NF1149_high_4
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_high_4 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 109 - 741
Target Start/End: Complemental strand, 507143 - 506527
Alignment:
| Q |
109 |
cgaagaatatgagaaacttgaataaaattaaaacaaaagaattgattgccagttcgtctggtttgtttccacgtgtcatgnnnnnnnaactctaaccaat |
208 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
507143 |
cgaagaaaatgagaaacttgaatacaattaaaacaaaagaattgattgccagttcgtctggtttgtttccacatgtcatgtttttttaactctaaccaat |
507044 |
T |
|
| Q |
209 |
tcttttatcagcgaaaaaatccaaaacaaacaataagttcaagcctttcatttagcatacctgttgatctctcacagctcttgcacctaatatgtacctt |
308 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
507043 |
tcttttatcagcgaaaaaattcaaaacaaacaataagttcaagcctttcatttagcatacctgttgatctctcacagctcttgcacctaatatgtacctt |
506944 |
T |
|
| Q |
309 |
attaggtgtgttcaccaagaacacaacacaaggtgtacccacatcctagcattaattacgatataatttgtttagcgttcttggtgaacacttgaattgc |
408 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
506943 |
attaggtgtgttcaccaagaac-----acaaggtgtacccacatcctagcattaattacgatataatttgtttagcgttcttggtgaacacttgaattgc |
506849 |
T |
|
| Q |
409 |
tccttttcatctcatacaattctcatttacaagtttttgtcaggaataatacagtggctaaaagttagccaaatgtagtttatgaatgattgtgatctta |
508 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
506848 |
tccttttca-----------tctcatttacaattttttgtcagg---aatacagtggctaaaagttagccaaatgtagtttatgaatgattg---tctta |
506766 |
T |
|
| Q |
509 |
aaggaacttatattattgtc------atgtaaagagatggaataaccttgttgcatttttgagccatcaatgtggtttcataaatagaaaagattcctaa |
602 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
506765 |
aaggaacttatattattgtcatgtaaatgtaaagagatggaataaccttgttgcatttttgagccatcaatgtggtttcataaatagaaaagattcctaa |
506666 |
T |
|
| Q |
603 |
aagtctagcaagtaacattgggcggcaaaagcaatggaggatctgatatatgttttgaactaacaatatcgataggaaaatcatttcttcttcccttctg |
702 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
506665 |
aagtctagcaagtaacattgggcagcaaaagcaatggaggatctgatatatgttttgaactaacaatatcgataggaaaatcatttcttcttcccttctg |
506566 |
T |
|
| Q |
703 |
agtaatataatcaaaaccaacactacctttggtgccaat |
741 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
506565 |
agtaatataatcaaaaccaacactacctttggtgccaat |
506527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 2e-48; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 333 - 606
Target Start/End: Complemental strand, 48000 - 47729
Alignment:
| Q |
333 |
aacacaaggtgtacccacatcctagcattaattacgatataatttgtttagcgttcttggtgaacacttgaattgctccttttcatctcatacaattctc |
432 |
Q |
| |
|
|||||||||||| |||| ||||||||| |||||||||||||| |||| || ||||||| ||||||| ||| | || || |||||||| ||||||| || |
|
|
| T |
48000 |
aacacaaggtgtcgccacgtcctagcatgaattacgatataatgtgttaagtgttcttgttgaacacctgatgtactactattcatctcgtacaattttc |
47901 |
T |
|
| Q |
433 |
atttacaagtttttgtcaggaataatacagtggctaaaa-----gttagccaaatgtagtttatgaatgattgtgatcttaaaggaacttatattattgt |
527 |
Q |
| |
|
|| |||||||||| || ||||||| | |||||||| || |||||||||| ||||||||| |||||| || |||||||||||||||||||| |
|
|
| T |
47900 |
atctacaagtttt-gttaggaatatg---gaggctaaaataaaagtaagccaaatgtggtttatgaacgattgt---ctcaaaggaacttatattattgt |
47808 |
T |
|
| Q |
528 |
catgtaaagagatggaataaccttgttgcatttttgagccatcaatgtggtttcataaatagaaaagattcctaaaagt |
606 |
Q |
| |
|
|||| |||| ||||||||| |||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||| |
|
|
| T |
47807 |
catgcaaagcgatggaatagccttgttgcatttttgagccatcactatggtttcagaaatagaaaagattcctaaaagt |
47729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 667 - 741
Target Start/End: Complemental strand, 47643 - 47569
Alignment:
| Q |
667 |
aatatcgataggaaaatcatttcttcttcccttctgagtaatataatcaaaaccaacactacctttggtgccaat |
741 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
47643 |
aatatcaataggaaaatcatttcttcttcccttctgagtaacataatcaaaaccaacactacctttggtgccaat |
47569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 314
Target Start/End: Complemental strand, 48200 - 48074
Alignment:
| Q |
196 |
aactctaaccaattcttttatcagcgaaaaaa-tccaaaacaaacaataagttcaagcc-------tttcatttagcatacctgttgatctctcacagct |
287 |
Q |
| |
|
|||||||||| ||||| || ||||| |||||| |||||||||| ||||||||||||| | |||||||| | |||| ||||||| |||||| |
|
|
| T |
48200 |
aactctaacccattctcttttcagcaaaaaaaatccaaaacaagcaataagttcaagtctttcatttttcattttgaatacacacagatctcttacagct |
48101 |
T |
|
| Q |
288 |
cttgcacctaatatgtaccttattagg |
314 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
48100 |
cttgcacctaatatgtaccttattagg |
48074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University