View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_high_43 (Length: 404)
Name: NF1149_high_43
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_high_43 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 34 - 391
Target Start/End: Complemental strand, 43015357 - 43015000
Alignment:
| Q |
34 |
ccttcaccggttgttgttgttgcactaattattctttgattattatcagaccaattacactgtcttggctgtgtctgataaaatatctttgaaacaacaa |
133 |
Q |
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| T |
43015357 |
ccttcaccagttgttgttgttgcactaattattctttgattattatcagaccaattacactgtcttggctgtgtctgataaaatatctttgaaacaacaa |
43015258 |
T |
|
| Q |
134 |
gctctccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcgtcttctcgggttttcgattctttccaaagttggtgtagag |
233 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43015257 |
gctctccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcgtcttctcgggttttcgattctttccgaagttggtgtagag |
43015158 |
T |
|
| Q |
234 |
aacaagaattttcttgcaacctttttgtttaccattaaccataacaggtctggtcttaccagttttgtgccatcttgtttctcctcctgtacttccttgt |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43015157 |
aacaagaattttcttgcaacctttttgtttaccattaaccataacaggtctggtcttaccagttttgtgccatcttgtttctcctcctgtacttccttgt |
43015058 |
T |
|
| Q |
334 |
aagtcacactcttcggtttgaatctttctcctctttcgtgttcctgttgtatatgcct |
391 |
Q |
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| T |
43015057 |
aagtcacactcttcggtttgaatctttctcctctttcgtgttcctgttgtatatgcct |
43015000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 314
Target Start/End: Original strand, 28948724 - 28948919
Alignment:
| Q |
119 |
tctttgaaacaacaagctctccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcgtcttctcgggttttcgattctttcc |
218 |
Q |
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| T |
28948724 |
tctttgaaacaactaattcaccatctttctcttcttcattactaccaaggtggtattgatgcatcacccaattggtcttctcaggcttcttttgccttcc |
28948823 |
T |
|
| Q |
219 |
aaagttggtgtagagaacaagaattttcttgcaacctttttgtttaccattaaccataacaggtctggtcttaccagttttgtgccatcttgtttc |
314 |
Q |
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| T |
28948824 |
atagttggtgtagaggactagtatcttcttgaaacctttcataacaccatcaataataactggtctagttttccctgttttgtgccatcttgtttc |
28948919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 94 - 233
Target Start/End: Complemental strand, 4235893 - 4235754
Alignment:
| Q |
94 |
tgtcttggctgtgtctgataaaatatctttgaaacaacaagctctccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcg |
193 |
Q |
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||||| ||||||||||| || || ||||||||| |||| | ||||| ||| | |||||||||| ||||||||||||||||||||||||||||| | |
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| T |
4235893 |
tgtctaggctgtgtctggtagaagatctttgaagcaacgaattctccatctctttcttcttcattcataccaagatggtattgatgcatcacccaattag |
4235794 |
T |
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| Q |
194 |
tcttctcgggttttcgattctttccaa-agttggtgtagag |
233 |
Q |
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| T |
4235793 |
tcttctctggttttcca-tctttgcaatagttggtgtagag |
4235754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 248
Target Start/End: Complemental strand, 38887137 - 38887028
Alignment:
| Q |
139 |
ccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcgtcttctcgggttttcgattctttccaaagttggtgtagagaacaa |
238 |
Q |
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||||||||||| ||||||| | ||||||||||||||| ||||| |||||||| || ||||| || |||| | ||||| |||| ||||| || |||| |
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| T |
38887137 |
ccttctttctcctcttcattgtttccaagatggtattggtgcataacccaatttgttttctctggctttctttgctttctgtagttagtgtaaagcacaa |
38887038 |
T |
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| Q |
239 |
gaattttctt |
248 |
Q |
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|||||||||| |
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| T |
38887037 |
gaattttctt |
38887028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 258
Target Start/End: Complemental strand, 30505981 - 30505860
Alignment:
| Q |
137 |
ctccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcgtcttctcgggttttcgattctttccaaagttggtgtagagaac |
236 |
Q |
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||||||||||||||||||||| |||||||| || ||||||||||||||||| || ||||| || |||| | |||||| |||| ||||| || || |
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| T |
30505981 |
ctccttctttctcttcttcatcactcccaagatgatactgatgcatcacccaatttgttttctctggctttctttgttttccatagtttgtgtaaagtac |
30505882 |
T |
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| Q |
237 |
aagaattttcttgcaacctttt |
258 |
Q |
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||||||||| ||| |||||||| |
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| T |
30505881 |
aagaatttttttgtaacctttt |
30505860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 257
Target Start/End: Original strand, 34829853 - 34830007
Alignment:
| Q |
103 |
tgtgtctgataaaatatctttgaaacaacaagctctccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcgtcttctcgg |
202 |
Q |
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||||| || ||||| | |||||||||||| | || || |||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| | |
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| T |
34829853 |
tgtgtttggtaaaacacctttgaaacaactaattcaccatctttctcttcttcattactaccaaggtggtattgatgcatcacccaattggtcttctcag |
34829952 |
T |
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| Q |
203 |
gttttcgattctttccaaagttggtgtagagaacaagaattttcttgcaaccttt |
257 |
Q |
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| T |
34829953 |
gcttcttttgccttccatagttggtgtagaggactagtatcttcttgaaaccttt |
34830007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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