View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_high_50 (Length: 391)
Name: NF1149_high_50
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_high_50 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 29656764 - 29657006
Alignment:
| Q |
1 |
attaatgaacagttagatatctcagctaactaaccgtgaatggcaatgccatttatattgtcgaactagcagcaactagtaagtcacattcatattgaat |
100 |
Q |
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| T |
29656764 |
attaatgaacagttagatatctcagctaactaaccgtgaatggcaatgccatttatattgtcgaactagca---actaggaagtcacattcatattgaat |
29656860 |
T |
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| Q |
101 |
gaaacaaaaactactttggtcaactaaatagtaatactaaccaatattttccactgcctaattgtgtttattttcgaactttataaatacatatcttatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29656861 |
gaaacaaaaactactttggtcaactaaatagtaatactaaccaatattttccactgcctaattgtgtttattttcgaactttataaatacatatcttatt |
29656960 |
T |
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| Q |
201 |
cttatggttctattttatgatgaacaaaccaaattgaagaactatg |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29656961 |
cttatggttctattttatgatgaacaaaccaaattgaagaactatg |
29657006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 280 - 350
Target Start/End: Original strand, 29657040 - 29657110
Alignment:
| Q |
280 |
attactgtccactaaaagaaacaaataaaataaaaggagtttcaaatttggtgttgttatgggatgtatgt |
350 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29657040 |
attactgtccactaaaagaaacaaataaaataaaaggagtttcaaatttggtgttgttatgggatgtatgt |
29657110 |
T |
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