View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_high_53 (Length: 383)
Name: NF1149_high_53
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_high_53 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 29 - 373
Target Start/End: Complemental strand, 31120756 - 31120412
Alignment:
| Q |
29 |
atcactaccggtattcttgttagcgctatttccacctttgtttgagtaatttcctgaaagaatccaaactgaaactttactatataaatctagacattaa |
128 |
Q |
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| T |
31120756 |
atcactaccggtattcttgttagcgctatttccacctttgtttgagtaatttcctgaaagaatccaaattgaaactttactatataaatctagacattaa |
31120657 |
T |
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| Q |
129 |
aaagtgatatgtttcctttatgtagacaagttttgaggttggaattaactcaagatggcatatatattttgtactctccatgtcaaactagtatatgttt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31120656 |
aaagtgatatgtttcctttatgtagacaagttttgaggttggaattaactcaagatggcatatatattttgtactctccatgtcaaactagtatatgttt |
31120557 |
T |
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| Q |
229 |
aacgaacctggtgctccataagtattggatcccatgtcgtgccttgttgaatctctccatccaccctaaagttccaagatagcgacagtatatgattagt |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
31120556 |
aacgaacctggtgctccataagtattggatcccatgtcgtgccttgttgaatctctccatccaccctaaagttccaagacagtgacagtatatgattagt |
31120457 |
T |
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| Q |
329 |
aacatgttaactagctataagagtaatgatactcatacacctatg |
373 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31120456 |
aacatgtcaactagctataagagtaatgatactcatacacctatg |
31120412 |
T |
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