View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1149_high_62 (Length: 357)

Name: NF1149_high_62
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1149_high_62
NF1149_high_62
[»] chr8 (1 HSPs)
chr8 (10-325)||(39724237-39724561)


Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 325
Target Start/End: Complemental strand, 39724561 - 39724237
Alignment:
Q  10 tcatagggaagaagcttatgctttatggggtgatggagagaaacttagtctctacaaagatgatactacacaacatggcatggcttcaagtggtgtcact 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39724561 tcatggggaagaagcttatgctttatggggtgatggagagaaacttagtctctacaaagatgatactacacaacatggcatggcttcaagtggtgtcact 39724462  T
Q  110 caagttgtctagatatca--------------acaagttggaaatcgatcgagagggttatgtagttgaaatgatgtcannnnnnnnnnnnnnnattgtg 195  Q
    ||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||               ||||||    
T  39724461 caagttgtctagatatcatatgagaaaattcaacaagttggaaatcgatcgagagggttatgtagttgaaatgatgtcatttttttttt-----attgtg 39724367  T
Q  196 aaaaatgtaatattgaaggaaacaaataattaaggaaaaaatgtctgatttgtttgtccttgtttttatacctgtagttgttcattttattatgttgtca 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39724366 aaaaatgtaatattgaaggaaacaaataattaaggaaaaaatgtctgatttgtttgtccttgtttttatacctgtagttgttcattttattatgttgtca 39724267  T
Q  296 tatatacctctaatgaattatttctgtgct 325  Q
    ||||||||||||||||||||||| ||||||    
T  39724266 tatatacctctaatgaattatttatgtgct 39724237  T

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