View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_high_78 (Length: 321)
Name: NF1149_high_78
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_high_78 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 28 - 314
Target Start/End: Original strand, 32219513 - 32219799
Alignment:
| Q |
28 |
cagcatttacattacatacatgaagtaacttcaaatgcaacaatttcttaatgtagagaaagactattggtcagttttggctctttttatcatttcattg |
127 |
Q |
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| T |
32219513 |
cagcatttacattacatacatgaagtaacttcaaatgcaacaatttcttaatgtagagaaagactattggtcagttttggctctttttatcatttcattg |
32219612 |
T |
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| Q |
128 |
gaggtgaatggagagagactaccactcagttgagggctctcttctctaaaacttgaattcagcattgcaagttctctaagttgttgcctcttgtaaatgt |
227 |
Q |
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| T |
32219613 |
gaggtgaatggagagagactaccactcagttgagggctctcttctctaaaacttgaattcagcattgcaagttctctaagttgttgcctcttgtaaatgt |
32219712 |
T |
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| Q |
228 |
cttgcgactcatcctgcacaaaagaataataaaggagagttagaaatattttggcacaagaatgatgtttatcttagagtataattt |
314 |
Q |
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| T |
32219713 |
cttgtgactcatcctgcacaaaagaataataaaggagagttagaaatattttggcacaagaatgacgtttatcttagagtttaattt |
32219799 |
T |
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Back To:
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Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 92 - 249
Target Start/End: Original strand, 28303968 - 28304122
Alignment:
| Q |
92 |
tattggtcagttttggctctttttatcatttcattggaggtgaatggagagagactaccactcagttgagggctctcttctctaaaacttgaattcagca |
191 |
Q |
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||||| |||||||||| |||||||| ||||||||| ||||||||||||| ||| |||||||||||||||||||||||||| || | ||||| |||| |
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| T |
28303968 |
tattgctcagttttgggcctttttat---ttcattggaagtgaatggagagacactgccactcagttgagggctctcttctctgaagttggaattgagca |
28304064 |
T |
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| Q |
192 |
ttgcaagttctctaagttgttgcctcttgtaaatgtcttgcgactcatcctgcacaaa |
249 |
Q |
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| T |
28304065 |
tagcaagttctcttagttgttgcctcttgtaaaggtcctgtgactcatcctacacaaa |
28304122 |
T |
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