View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_high_80 (Length: 307)
Name: NF1149_high_80
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_high_80 |
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| [»] scaffold0504 (1 HSPs) |
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Alignment Details
Target: scaffold0504 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: scaffold0504
Description:
Target: scaffold0504; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 29 - 299
Target Start/End: Original strand, 8022 - 8292
Alignment:
| Q |
29 |
agttgttggtcggacgatatgaaatctgaactcttcaactttgatgatgaagagcagaggaagtgaagctcttcagtgatccattttttgagggtattga |
128 |
Q |
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| T |
8022 |
agttggtggtcggacgatatgaaatctgaactcttcaactttgatgatgaagagcagaggaagtgaagctcttcagtgatccattttttgagggtattga |
8121 |
T |
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| Q |
129 |
tggttctttcatggatgaatgattcccttgcattttcagttgttttttgatgtttaactaactatgatgttgtatggtagtgttctaatttctatcatgt |
228 |
Q |
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| T |
8122 |
tggttctttcatggatgaatgattcccttgcactttaaattgtcttttgctgtttaactaactatgatattgtatggtagtgttctaatttctatcatgt |
8221 |
T |
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| Q |
229 |
tttgttttgaatgttgtctaacctttgtaactgtggttctgaactctagttaatattaaccaccctatgat |
299 |
Q |
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| T |
8222 |
tttgttttgaatgttgtctaacatttgtaactgtggttcagaactttaggtaatattaaccaccttatgat |
8292 |
T |
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Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 103 - 292
Target Start/End: Complemental strand, 12026421 - 12026226
Alignment:
| Q |
103 |
agtgatccattttttgagggtattgatggttctttcatggatgaatgattcccttgcattttcagttgttttttgatgtttaactaactatgatgtt--- |
199 |
Q |
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| T |
12026421 |
agtgatccattttttgagggtattgatggttctttcatgaatgaatgattcccttgcactttaaattgtcttttcatgtttaactaactatgatgttgta |
12026322 |
T |
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| Q |
200 |
---gtatggtagtgttctaatttctatcatgttttgttttgaatgttgtctaacctttgtaactgtggttctgaactctagttaatattaaccacc |
292 |
Q |
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| T |
12026321 |
tcggtatggtagggttctaatttctatcatgttttgttttgaatgatgtctaacatttgtatctgtggttcggaactttagttaatattaaccacc |
12026226 |
T |
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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 273
Target Start/End: Original strand, 18189679 - 18189766
Alignment:
| Q |
182 |
ttaactaactatgatgttgtatggtagtg-ttctaatttctatcatgttttgttttgaatgttgtctaacctttgtaactgtggttctgaact |
273 |
Q |
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| T |
18189679 |
ttaactaactatgatgttgtaaggtagtgattctaattttgatca-----tgttttgaatgttggctaacatttgtaactgtggttcagaact |
18189766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 18189498 - 18189569
Alignment:
| Q |
29 |
agttgttggtcggacgatatgaaatctgaactcttcaactttgatgatgaagagcagaggaagtgaagctct |
100 |
Q |
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| T |
18189498 |
agttggtggccggaggatatgaaatctcaactcttcaacttcgatgataaggaggagaggaaatgaaactct |
18189569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 69
Target Start/End: Original strand, 54631945 - 54631973
Alignment:
| Q |
41 |
gacgatatgaaatctgaactcttcaactt |
69 |
Q |
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| T |
54631945 |
gacgatatgaaatctgaactcttcaactt |
54631973 |
T |
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