View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1149_high_84 (Length: 296)

Name: NF1149_high_84
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1149_high_84
NF1149_high_84
[»] chr8 (7 HSPs)
chr8 (107-296)||(25495046-25495235)
chr8 (125-290)||(25650885-25651055)
chr8 (153-296)||(25618154-25618297)
chr8 (207-292)||(25359114-25359199)
chr8 (207-292)||(25399147-25399232)
chr8 (42-104)||(25495299-25495361)
chr8 (42-104)||(25651248-25651310)
[»] scaffold0466 (2 HSPs)
scaffold0466 (107-296)||(6117-6310)
scaffold0466 (47-104)||(5996-6053)
[»] scaffold1041 (2 HSPs)
scaffold1041 (107-193)||(464-549)
scaffold1041 (42-104)||(347-409)
[»] chr1 (1 HSPs)
chr1 (177-282)||(32973413-32973518)
[»] chr3 (1 HSPs)
chr3 (165-245)||(15673459-15673539)


Alignment Details
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 107 - 296
Target Start/End: Complemental strand, 25495235 - 25495046
Alignment:
Q  107 aactaacaaaacataaccaaattatggttggaaccatgacttttaggaaggaaaattagaacaattcttgatatgactcgaatcatgctcaaaagtaaga 206  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25495235 aactaacaaaacataac-aaattatggttggaaccatgatttttaggaaggaaaattagaacaattcttgatatgactcgaatcatgctcaaaagtaaga 25495137  T
Q  207 aactaccaaaataattgt-gggttgaagttgtggcgtgtgtagtcgaattaactaatagatctccaacaataagtgtctgaaaaacaccac 296  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25495136 aactaccaaaataattgtggggttgaagttgtggcgtgtgtagtcgaattaactaatagatctccaacaataagtgtgtgaaaaacaccac 25495046  T

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Target: chr8; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 125 - 290
Target Start/End: Complemental strand, 25651055 - 25650885
Alignment:
Q  125 aaattatggttggaaccatgacttttaggaaggaaaattagaacaattcttgatatgact-----cgaatcatgctcaaaagtaagaaactaccaaaata 219  Q
    ||||||||||| ||||||||  || |||||||||||||||||||||||||||||||| ||     |||||||||||||||||||||||||||||||||||    
T  25651055 aaattatggttcgaaccatgctttgtaggaaggaaaattagaacaattcttgatatggcttggctcgaatcatgctcaaaagtaagaaactaccaaaata 25650956  T
Q  220 attgtgggttgaagttgtggcgtgtgtagtcgaattaactaatagatctccaacaataagtgtctgaaaaa 290  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  25650955 attgtgggttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaataagtgtgtgaaaaa 25650885  T

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Target: chr8; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 153 - 296
Target Start/End: Complemental strand, 25618297 - 25618154
Alignment:
Q  153 gaaggaaaattagaacaattcttgatatgactcgaatcatgctcaaaagtaagaaactaccaaaataattgtgggttgaagttgtggcgtgtgtagtcga 252  Q
    |||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  25618297 gaaggaaaattagaacaattgttgatatggctcgaatcatgctccaaagtaagaaactaccaaaataattgtgggtttaagttgtggcgtgtgtagtcta 25618198  T
Q  253 attaactaatagatctccaacaataagtgtctgaaaaacaccac 296  Q
    |||||||||||||||||||||||||||| | |||||||||||||    
T  25618197 attaactaatagatctccaacaataagtatgtgaaaaacaccac 25618154  T

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Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 207 - 292
Target Start/End: Complemental strand, 25359199 - 25359114
Alignment:
Q  207 aactaccaaaataattgtgggttgaagttgtggcgtgtgtagtcgaattaactaatagatctccaacaataagtgtctgaaaaaca 292  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||    
T  25359199 aactaccaaaataattgttggttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaattagtgtgtgaaaaaca 25359114  T

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Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 207 - 292
Target Start/End: Complemental strand, 25399232 - 25399147
Alignment:
Q  207 aactaccaaaataattgtgggttgaagttgtggcgtgtgtagtcgaattaactaatagatctccaacaataagtgtctgaaaaaca 292  Q
    |||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||    
T  25399232 aactaccaaaataattattggttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaattagtgtgtgaaaaaca 25399147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 25495361 - 25495299
Alignment:
Q  42 tcaagaataacaaaggtacaatcgagagaaccagcttgcagataaaagctatatggatgtacc 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  25495361 tcaagaataacaaaggtacaatcgagagaaccagcttgcagataaaagctatatggacgtacc 25495299  T

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Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 25651310 - 25651248
Alignment:
Q  42 tcaagaataacaaaggtacaatcgagagaaccagcttgcagataaaagctatatggatgtacc 104  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  25651310 tcaagaataacaaaggtactatcgagagaaccagcttgcagataaaagctatatggacgtacc 25651248  T

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Target: scaffold0466 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 107 - 296
Target Start/End: Original strand, 6117 - 6310
Alignment:
Q  107 aactaacaaaacataaccaaattatggttggaaccatgacttttaggaaggaaaattagaacaattcttgatatgact-----cgaatcatgctcaaaag 201  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||     |||||||||||||||||    
T  6117 aactaacaaaacataac-aaattatggttggaaccatgatttttaggaaggaaaattagaacaattcttgatatggcttggctcgaatcatgctcaaaag 6215  T
Q  202 taagaaactaccaaaataattgtgggttgaagttgtggcgtgtgtagtcgaattaactaatagatctccaacaataagtgtctgaaaaacaccac 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  6216 taagaaactaccaaaataattgtgggttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaataagtgtgtgaaaaacaccac 6310  T

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Target: scaffold0466; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 5996 - 6053
Alignment:
Q  47 aataacaaaggtacaatcgagagaaccagcttgcagataaaagctatatggatgtacc 104  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||    
T  5996 aataacaaaggtaaaatcgagagaaccagcttacagataaaagctatatggacgtacc 6053  T

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Target: scaffold1041 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold1041
Description:

Target: scaffold1041; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 193
Target Start/End: Original strand, 464 - 549
Alignment:
Q  107 aactaacaaaacataaccaaattatggttggaaccatgacttttaggaaggaaaattagaacaattcttgatatgactcgaatcatg 193  Q
    ||||||||||||| ||| ||||||||||  |||||||   ||||||||||||||||||||||||||||||||||| |||||||||||    
T  464 aactaacaaaacagaac-aaattatggtccgaaccattctttttaggaaggaaaattagaacaattcttgatatggctcgaatcatg 549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1041; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 347 - 409
Alignment:
Q  42 tcaagaataacaaaggtacaatcgagagaaccagcttgcagataaaagctatatggatgtacc 104  Q
    ||||||||||||||| ||  || |||||||||||||||||||||||||||||||||| |||||    
T  347 tcaagaataacaaagctattatggagagaaccagcttgcagataaaagctatatggacgtacc 409  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 282
Target Start/End: Original strand, 32973413 - 32973518
Alignment:
Q  177 atatgactcgaatcatgctcaaaagtaagaaactaccaaaataattgtgggttgaagttgtggcgtgtgtagtcgaattaactaatagatctccaacaat 276  Q
    ||||| |||||| | || ||||||  ||||||||||||||| |||| ||||||||||||||| | |||| |||| |  || ||||||||||||||||||     
T  32973413 atatggctcgaagcttggtcaaaatcaagaaactaccaaaagaattttgggttgaagttgtgacatgtgcagtctatctatctaatagatctccaacaag 32973512  T
Q  277 aagtgt 282  Q
    ||||||    
T  32973513 aagtgt 32973518  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 245
Target Start/End: Complemental strand, 15673539 - 15673459
Alignment:
Q  165 gaacaattcttgatatgactcgaatcatgctcaaaagtaagaaactaccaaaataattgtgggttgaagttgtggcgtgtg 245  Q
    ||||||| ||||||||| |||||| |||||||||||||||||| ||||||||| | || |||| ||||||| ||| |||||    
T  15673539 gaacaatacttgatatggctcgaagcatgctcaaaagtaagaatctaccaaaagagttttgggctgaagttttggtgtgtg 15673459  T

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