View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_high_94 (Length: 259)
Name: NF1149_high_94
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_high_94 |
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| [»] scaffold0753 (1 HSPs) |
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Alignment Details
Target: scaffold0753 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0753
Description:
Target: scaffold0753; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 206
Target Start/End: Original strand, 5911 - 5970
Alignment:
| Q |
147 |
ttgactgtatgtggcatatttacattttcactttgcagttacaatgctaccccaaaaaga |
206 |
Q |
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| T |
5911 |
ttgactgtttgtgtcatatttacattttcacattgcagttacaatgctaggccaaaaaga |
5970 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 9134075 - 9133997
Alignment:
| Q |
143 |
cttattgactgtatgtggcatatttacattttcactttgcagttacaatgctaccccaaaaagaggcaccttctgacat |
221 |
Q |
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| T |
9134075 |
cttattgaatgtttgtgacatatttacattttcacattgtagttacaatgcaagcccaagaggaggcacctcctgacat |
9133997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 9125795 - 9125759
Alignment:
| Q |
223 |
taaagtattccgcgacaacatatcctttcggagacat |
259 |
Q |
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| T |
9125795 |
taaagtattccgcgacaacatatcctttcggagacat |
9125759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 9300539 - 9300599
Alignment:
| Q |
161 |
catatttacattttcactttgcagttacaatgctaccccaaaaagaggcaccttctgacat |
221 |
Q |
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| T |
9300539 |
catatttacattttcactttgcagttacaatgcaaggctaaaaggaggcacctcctgacat |
9300599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 9309153 - 9309099
Alignment:
| Q |
167 |
tacattttcactttgcagttacaatgctaccccaaaaagaggcaccttctgacat |
221 |
Q |
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| T |
9309153 |
tacattttcactttgtagttacaatgcaaggccaaaaggaggcacctcctgacat |
9309099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 193
Target Start/End: Original strand, 9156199 - 9156231
Alignment:
| Q |
161 |
catatttacattttcactttgcagttacaatgc |
193 |
Q |
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| T |
9156199 |
catatttacattttcactttgtagttacaatgc |
9156231 |
T |
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