View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_low_10 (Length: 653)
Name: NF1149_low_10
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 11 - 653
Target Start/End: Complemental strand, 507153 - 506527
Alignment:
| Q |
11 |
ataatatgaccgaagaaaatgagaaacttgaataaaattaaaacaaaagaattgattgccagttcgtctggtttgtttccacgtgtcatgnnnnnnnaac |
110 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
507153 |
ataaaatgaccgaagaaaatgagaaacttgaatacaattaaaacaaaagaattgattgccagttcgtctggtttgtttccacatgtcatgtttttttaac |
507054 |
T |
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| Q |
111 |
tctaaccaattcttttatcagcgaaaaaatccaaaacaaacaataagttcaagcctttcatttagcatacctgttgatctctcacagctcttgcacctaa |
210 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
507053 |
tctaaccaattcttttatcagcgaaaaaattcaaaacaaacaataagttcaagcctttcatttagcatacctgttgatctctcacagctcttgcacctaa |
506954 |
T |
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| Q |
211 |
tatgtaccttattaggtgtgttcaccaagaacacaacacaaggtgtacccacatcctagcattaattacgatataatttgtttagcgttcttggtgaaca |
310 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
506953 |
tatgtaccttattaggtgtgttcaccaagaac-----acaaggtgtacccacatcctagcattaattacgatataatttgtttagcgttcttggtgaaca |
506859 |
T |
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| Q |
311 |
cttgaattgctccttttcatctcatacaattctcatttacaagtttttgtcaggaataatacagtggctaaaagttagccaaatgtagtttatgaatgat |
410 |
Q |
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| T |
506858 |
cttgaattgctccttttca-----------tctcatttacaattttttgtcagg---aatacagtggctaaaagttagccaaatgtagtttatgaatgat |
506773 |
T |
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| Q |
411 |
tgtgatcttaaaggaacttatattattgtc------atgtaaagagatggaataaccttgttgcatttttgagccatcaatgtggtttcataaatagaaa |
504 |
Q |
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| T |
506772 |
tg---tcttaaaggaacttatattattgtcatgtaaatgtaaagagatggaataaccttgttgcatttttgagccatcaatgtggtttcataaatagaaa |
506676 |
T |
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| Q |
505 |
agattcctaaaagtctagcaagtaacattgggcggcaaaagcaatggaggatctgatatatgttttgaactaacaatatcgataggaaaatcatttcttc |
604 |
Q |
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| T |
506675 |
agattcctaaaagtctagcaagtaacattgggcagcaaaagcaatggaggatctgatatatgttttgaactaacaatatcgataggaaaatcatttcttc |
506576 |
T |
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| Q |
605 |
ttcccttctgagtaatataatcaaaaccaacactacctttggtgccaat |
653 |
Q |
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| T |
506575 |
ttcccttctgagtaatataatcaaaaccaacactacctttggtgccaat |
506527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 2e-48; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 245 - 518
Target Start/End: Complemental strand, 48000 - 47729
Alignment:
| Q |
245 |
aacacaaggtgtacccacatcctagcattaattacgatataatttgtttagcgttcttggtgaacacttgaattgctccttttcatctcatacaattctc |
344 |
Q |
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| T |
48000 |
aacacaaggtgtcgccacgtcctagcatgaattacgatataatgtgttaagtgttcttgttgaacacctgatgtactactattcatctcgtacaattttc |
47901 |
T |
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| Q |
345 |
atttacaagtttttgtcaggaataatacagtggctaaaa-----gttagccaaatgtagtttatgaatgattgtgatcttaaaggaacttatattattgt |
439 |
Q |
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| T |
47900 |
atctacaagtttt-gttaggaatatg---gaggctaaaataaaagtaagccaaatgtggtttatgaacgattgt---ctcaaaggaacttatattattgt |
47808 |
T |
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| Q |
440 |
catgtaaagagatggaataaccttgttgcatttttgagccatcaatgtggtttcataaatagaaaagattcctaaaagt |
518 |
Q |
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| T |
47807 |
catgcaaagcgatggaatagccttgttgcatttttgagccatcactatggtttcagaaatagaaaagattcctaaaagt |
47729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 579 - 653
Target Start/End: Complemental strand, 47643 - 47569
Alignment:
| Q |
579 |
aatatcgataggaaaatcatttcttcttcccttctgagtaatataatcaaaaccaacactacctttggtgccaat |
653 |
Q |
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| T |
47643 |
aatatcaataggaaaatcatttcttcttcccttctgagtaacataatcaaaaccaacactacctttggtgccaat |
47569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 226
Target Start/End: Complemental strand, 48200 - 48074
Alignment:
| Q |
108 |
aactctaaccaattcttttatcagcgaaaaaa-tccaaaacaaacaataagttcaagcc-------tttcatttagcatacctgttgatctctcacagct |
199 |
Q |
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|||||||||| ||||| || ||||| |||||| |||||||||| ||||||||||||| | |||||||| | |||| ||||||| |||||| |
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| T |
48200 |
aactctaacccattctcttttcagcaaaaaaaatccaaaacaagcaataagttcaagtctttcatttttcattttgaatacacacagatctcttacagct |
48101 |
T |
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| Q |
200 |
cttgcacctaatatgtaccttattagg |
226 |
Q |
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| T |
48100 |
cttgcacctaatatgtaccttattagg |
48074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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