View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_low_100 (Length: 296)
Name: NF1149_low_100
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_100 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 81 - 286
Target Start/End: Complemental strand, 238052 - 237847
Alignment:
| Q |
81 |
cataagtatgtccggtgatggattggactattcaattgcatgcatgttgagagttcttctctctactagtgtgtgtccatttgttcatataccattattt |
180 |
Q |
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| T |
238052 |
cataagtatgtccggtgatggattagactattcaattgcatgcatgttgagagttcttctctctactagtgtgtgtccatttggtcatataccattattt |
237953 |
T |
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| Q |
181 |
gtaacacaaagtaagagagggtcaactctcatactctaagtctctaacgacaatcttcatctcatactcttaattttaatgcttcctcgatcccaaatga |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
237952 |
gtaacacaaagtaagagagggtcaactctcatactctaagtctctaacgacaatctttctctcatactcttaattttaatgcttcctcgatcccaaatta |
237853 |
T |
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| Q |
281 |
tgatgt |
286 |
Q |
| |
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|||||| |
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| T |
237852 |
tgatgt |
237847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 206 - 286
Target Start/End: Original strand, 228980 - 229060
Alignment:
| Q |
206 |
ctctcatactctaagtctctaacgacaatcttcatctcatactcttaattttaatgcttcctcgatcccaaatgatgatgt |
286 |
Q |
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||||||||||||||||||||||| ||||||||| || |||||||||| |||||||||| ||||| ||| |||| ||||||| |
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| T |
228980 |
ctctcatactctaagtctctaacaacaatcttcctcccatactcttatttttaatgctccctcggtcctaaattatgatgt |
229060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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