View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1149_low_105 (Length: 287)

Name: NF1149_low_105
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1149_low_105
NF1149_low_105
[»] chr6 (15 HSPs)
chr6 (29-287)||(33117425-33117665)
chr6 (119-248)||(9093574-9093704)
chr6 (164-248)||(4163097-4163182)
chr6 (164-248)||(4224718-4224803)
chr6 (178-239)||(8844731-8844792)
chr6 (117-189)||(34430477-34430550)
chr6 (191-239)||(3171522-3171570)
chr6 (119-213)||(2735026-2735121)
chr6 (179-226)||(8147646-8147693)
chr6 (166-228)||(12836237-12836300)
chr6 (112-149)||(835035-835072)
chr6 (179-228)||(30536637-30536686)
chr6 (119-155)||(837234-837270)
chr6 (180-236)||(4578143-4578199)
chr6 (174-226)||(18690438-18690490)
[»] chr5 (19 HSPs)
chr5 (125-271)||(39105356-39105510)
chr5 (126-247)||(12425494-12425616)
chr5 (179-275)||(6096434-6096535)
chr5 (164-226)||(3932746-3932811)
chr5 (179-277)||(19460465-19460570)
chr5 (107-247)||(7674571-7674713)
chr5 (125-277)||(9202772-9202932)
chr5 (125-225)||(10639898-10639999)
chr5 (163-225)||(14932235-14932297)
chr5 (127-228)||(16458005-16458106)
chr5 (117-228)||(29925783-29925895)
chr5 (179-228)||(42500304-42500353)
chr5 (125-202)||(24030425-24030504)
chr5 (179-226)||(35445999-35446046)
chr5 (117-216)||(13697775-13697875)
chr5 (179-244)||(465880-465945)
chr5 (182-239)||(4855629-4855686)
chr5 (188-237)||(32022004-32022053)
chr5 (130-183)||(32942606-32942659)
[»] chr4 (26 HSPs)
chr4 (119-277)||(3155489-3155655)
chr4 (128-274)||(34430715-34430854)
chr4 (125-202)||(17822889-17822967)
chr4 (119-222)||(29912897-29913000)
chr4 (119-249)||(51630032-51630163)
chr4 (179-269)||(1242354-1242457)
chr4 (167-228)||(41336703-41336764)
chr4 (191-277)||(1203208-1203296)
chr4 (179-228)||(43505898-43505947)
chr4 (127-226)||(9760384-9760484)
chr4 (117-228)||(20108951-20109063)
chr4 (169-239)||(7601690-7601761)
chr4 (107-224)||(17884014-17884133)
chr4 (170-216)||(13216274-13216320)
chr4 (179-249)||(23503480-23503550)
chr4 (180-249)||(40174486-40174553)
chr4 (179-224)||(403473-403518)
chr4 (178-207)||(679679-679708)
chr4 (180-225)||(3175896-3175941)
chr4 (107-210)||(42685384-42685489)
chr4 (126-234)||(54392844-54392952)
chr4 (117-232)||(2996511-2996627)
chr4 (185-249)||(6364070-6364134)
chr4 (163-226)||(25904272-25904336)
chr4 (103-154)||(49202662-49202714)
chr4 (127-234)||(56480284-56480392)
[»] chr8 (13 HSPs)
chr8 (180-277)||(41475140-41475244)
chr8 (119-232)||(10114428-10114541)
chr8 (102-226)||(1058077-1058200)
chr8 (163-228)||(12497293-12497359)
chr8 (117-226)||(35534629-35534736)
chr8 (180-232)||(7026669-7026721)
chr8 (119-194)||(27028807-27028883)
chr8 (130-213)||(29168921-29169005)
chr8 (180-239)||(14280481-14280540)
chr8 (173-226)||(12976157-12976211)
chr8 (125-178)||(30251478-30251531)
chr8 (117-204)||(18133622-18133710)
chr8 (180-248)||(37444495-37444563)
[»] chr7 (15 HSPs)
chr7 (117-222)||(39279910-39280016)
chr7 (157-228)||(9210570-9210641)
chr7 (125-226)||(40252131-40252233)
chr7 (125-226)||(48469988-48470090)
chr7 (125-248)||(47177558-47177682)
chr7 (125-221)||(20526395-20526492)
chr7 (125-213)||(40689010-40689099)
chr7 (117-216)||(20269530-20269630)
chr7 (117-199)||(17944359-17944442)
chr7 (117-191)||(46280288-46280363)
chr7 (166-231)||(28613599-28613665)
chr7 (182-228)||(45806408-45806454)
chr7 (127-239)||(12110291-12110404)
chr7 (179-248)||(40009392-40009461)
chr7 (183-228)||(45004708-45004753)
[»] chr3 (19 HSPs)
chr3 (125-226)||(20880421-20880522)
chr3 (126-232)||(39602235-39602341)
chr3 (134-226)||(30956659-30956752)
chr3 (134-226)||(30972471-30972564)
chr3 (179-277)||(34235155-34235260)
chr3 (125-223)||(2719416-2719514)
chr3 (179-226)||(10704652-10704699)
chr3 (117-226)||(3845578-3845688)
chr3 (179-269)||(7814218-7814321)
chr3 (134-228)||(12862281-12862375)
chr3 (163-228)||(16073105-16073171)
chr3 (117-202)||(30443861-30443947)
chr3 (125-225)||(14145857-14145958)
chr3 (117-224)||(36631067-36631175)
chr3 (179-239)||(44061102-44061162)
chr3 (180-239)||(21661445-21661504)
chr3 (127-208)||(36189528-36189610)
chr3 (180-249)||(31403279-31403348)
chr3 (179-248)||(32095270-32095338)
[»] chr2 (20 HSPs)
chr2 (117-226)||(12464489-12464599)
chr2 (166-249)||(42420359-42420443)
chr2 (125-232)||(3611164-3611272)
chr2 (119-249)||(4026738-4026869)
chr2 (126-228)||(32592529-32592631)
chr2 (101-153)||(7928298-7928351)
chr2 (181-249)||(39567824-39567892)
chr2 (179-246)||(36114602-36114669)
chr2 (179-246)||(42457872-42457939)
chr2 (117-228)||(43279545-43279655)
chr2 (182-248)||(7928376-7928442)
chr2 (126-207)||(18066091-18066173)
chr2 (117-183)||(20952343-20952409)
chr2 (117-226)||(41241148-41241258)
chr2 (191-232)||(3102631-3102672)
chr2 (180-249)||(10619295-10619364)
chr2 (125-213)||(41851492-41851581)
chr2 (180-225)||(43570359-43570404)
chr2 (114-224)||(23974505-23974614)
chr2 (131-226)||(41812121-41812216)
[»] scaffold0024 (2 HSPs)
scaffold0024 (180-248)||(21358-21426)
scaffold0024 (180-248)||(58859-58927)
[»] chr1 (18 HSPs)
chr1 (117-226)||(24915067-24915177)
chr1 (107-232)||(4576744-4576870)
chr1 (179-269)||(31774120-31774223)
chr1 (102-155)||(38503465-38503519)
chr1 (117-226)||(47432040-47432149)
chr1 (102-213)||(15687346-15687461)
chr1 (102-151)||(27145736-27145785)
chr1 (102-225)||(27820337-27820461)
chr1 (118-225)||(34795442-34795550)
chr1 (120-227)||(37517213-37517321)
chr1 (164-247)||(51190784-51190868)
chr1 (219-277)||(2294989-2295045)
chr1 (166-244)||(30581728-30581807)
chr1 (180-246)||(23544720-23544786)
chr1 (117-226)||(37631575-37631685)
chr1 (117-192)||(3234031-3234107)
chr1 (119-171)||(7137016-7137068)
chr1 (179-231)||(45145165-45145217)
[»] scaffold0103 (1 HSPs)
scaffold0103 (180-230)||(51508-51558)


Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 29 - 287
Target Start/End: Complemental strand, 33117665 - 33117425
Alignment:
Q  29 attacgagcttgttgaattgacttatttgcgtttatttattgatgttataagttttgtgagactattcggaaggacattgtttataagttttttcggctt 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||    
T  33117665 attacgagcttgttgaattgacttatttgcgtttatttattgatgttataagttttgtgagactattcggaaggacatt------------------ctt 33117584  T
Q  129 attttcataagttatccaagatagctatttaaatcagcttataacatataaaaaacaatttaacttaattttatattttgctataaaagtagcttatgca 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33117583 attttcataagttatccaagatagctatttaaatcagcttataacatataaaaaacaatttaacttaattttatattttgctataaaagtagcttatgca 33117484  T
Q  229 taagtgcttattatgataagcctataagctgcaaataagttgtttatccttctttcttt 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33117483 taagtgcttattatgataagcctataagctgcaaataagttgtttatccttctttcttt 33117425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 248
Target Start/End: Original strand, 9093574 - 9093704
Alignment:
Q  119 ttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatataa-aaaacaatttaacttaattttatattttgctataaaag 217  Q
    ||||| |||||||||| |||||| || |||| ||||  | ||| ||||||||| | ||||  ||||||||||||||| ||||||| ||||| |||| ||     
T  9093574 ttttcagcttattttcttaagttctctaagacagcttatgaaaacagcttatagcttatacgaaaacaatttaactttattttatcttttgatatagaaa 9093673  T
Q  218 tagcttatgcataagtgcttattatgataag 248  Q
    |||||||| |||||| |||||| ||||||||    
T  9093674 tagcttatccataagcgcttatcatgataag 9093704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 4163182 - 4163097
Alignment:
Q  164 agcttataacatataaa-aaacaatttaacttaattttatattttgctataaaagtagcttatgcataagtgcttattatgataag 248  Q
    ||||||||||||||| | |||||||||||||| ||||||| | || |||||||| |||||||||  |||||| |||| ||||||||    
T  4163182 agcttataacatatacacaaacaatttaactttattttatctatttctataaaaatagcttatgtgtaagtgtttatcatgataag 4163097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 4224803 - 4224718
Alignment:
Q  164 agcttataacatataaa-aaacaatttaacttaattttatattttgctataaaagtagcttatgcataagtgcttattatgataag 248  Q
    ||||||||||||||| | |||||||||||||| ||||||| | || |||||||| |||||||||  |||||| |||| ||||||||    
T  4224803 agcttataacatatacacaaacaatttaactttattttatctatttctataaaaatagcttatgtgtaagtgtttatcatgataag 4224718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 8844731 - 8844792
Alignment:
Q  178 aaaaaacaatttaacttaattttatattttgctataaaagtagcttatgcataagtgcttat 239  Q
    ||||||| ||||||  |||||||||  |||||||||||||||| ||||||||||||||||||    
T  8844731 aaaaaaccatttaaggtaattttatcatttgctataaaagtagattatgcataagtgcttat 8844792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 189
Target Start/End: Original strand, 34430477 - 34430550
Alignment:
Q  117 ttttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaattt 189  Q
    ||||||| |||||||||||||| || ||||||||||||  | ||| || ||||||||||||| |||||||||||    
T  34430477 ttttttcagcttattttcataacttctccaagatagcttatgaaaacaccttataacatatacaaaaacaattt 34430550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 3171522 - 3171570
Alignment:
Q  191 acttaattttatattttgctataaaagtagcttatgcataagtgcttat 239  Q
    |||||||||||| ||||| ||||||| ||||||||||||||| ||||||    
T  3171522 acttaattttatcttttgttataaaaatagcttatgcataagcgcttat 3171570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 213
Target Start/End: Complemental strand, 2735121 - 2735026
Alignment:
Q  119 ttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttgctata 213  Q
    ||||||||||||||||||||||| | |||||| |||  | ||| |||||||||   |||| ||||| |||||||||| ||||||| ||||| ||||    
T  2735121 ttttcggcttattttcataagttgttcaagattgcttatgaaaacagcttatagattatacaaaaataatttaactttattttatcttttgttata 2735026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 8147693 - 8147646
Alignment:
Q  179 aaaaacaatttaacttaattttatattttgctataaaagtagcttatg 226  Q
    |||||||||| ||||| ||||||| ||||||||||||| |||||||||    
T  8147693 aaaaacaattcaactttattttatcttttgctataaaaatagcttatg 8147646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 12836237 - 12836300
Alignment:
Q  166 cttataacatata-aaaaacaatttaacttaattttatattttgctataaaagtagcttatgca 228  Q
    |||| |||||||| ||||| |||||||| | ||||||||||||||| ||||||| |||||||||    
T  12836237 cttacaacatatagaaaaataatttaacattattttatattttgctttaaaagttgcttatgca 12836300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 835035 - 835072
Alignment:
Q  112 ataagttttttcggcttattttcataagttatccaaga 149  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  835035 ataagttttttcagcttattttcataagttctccaaga 835072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 30536637 - 30536686
Alignment:
Q  179 aaaaacaatttaacttaattttatattttgctataaaagtagcttatgca 228  Q
    |||||||||||||| | || |||| ||||||||||||| |||||||||||    
T  30536637 aaaaacaatttaacgttatcttatcttttgctataaaaatagcttatgca 30536686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 837234 - 837270
Alignment:
Q  119 ttttcggcttattttcataagttatccaagatagcta 155  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  837234 ttttcagcttattttcataagttctccaagatagcta 837270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 4578143 - 4578199
Alignment:
Q  180 aaaacaatttaacttaattttatattttgctataaaagtagcttatgcataagtgct 236  Q
    ||||||||||||| ||| ||||| ||||||| || || ||| |||||||||||||||    
T  4578143 aaaacaatttaacataaatttatcttttgctgtagaaatagtttatgcataagtgct 4578199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 18690490 - 18690438
Alignment:
Q  174 atataaaaaacaatttaacttaattttatattttgctataaaagtagcttatg 226  Q
    |||||||||||| ||||| || |||||||  ||||||||||||||| ||||||    
T  18690490 atataaaaaacagtttaaatttattttatcctttgctataaaagtaccttatg 18690438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 271
Target Start/End: Complemental strand, 39105510 - 39105356
Alignment:
Q  125 gcttattttcataagttatccaagatagctatttaaatcagcttataacatataa-aaaacaatttaacttaattttatattttgctataaaagtagctt 223  Q
    ||||||||||||||||| ||||||||||||  | ||| ||| ||||| | ||||  ||||||||||||||| |||| |||||| |||||| || ||||||    
T  39105510 gcttattttcataagttctccaagatagcttatgaaaacagattatagcttatacgaaaacaatttaacttcatttcatatttagctatagaaatagctt 39105411  T
Q  224 atgcataagtgcttattatgataagc-------ctataagctgcaaataagttgt 271  Q
    || |||||| |||||| |||||||||       ||||||||||||||||||||||    
T  39105410 atacataagcgcttatcatgataagcacttatgctataagctgcaaataagttgt 39105356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 247
Target Start/End: Complemental strand, 12425616 - 12425494
Alignment:
Q  126 cttattttcataagttatccaagatagctatttaaatcagcttataacatataa-aaaacaatttaacttaattttatattttgctataaaagtagctta 224  Q
    |||||||||||||||| ||||||||||||  | ||| ||||||||| | ||||  ||||||||||||||| ||||||| |||| ||||| || ||| |||    
T  12425616 cttattttcataagttctccaagatagcttgtgaaaacagcttatagcttatacgaaaacaatttaactttattttatcttttactatataaatagttta 12425517  T
Q  225 tgcataagtgcttattatgataa 247  Q
    | |||||| | |||| |||||||    
T  12425516 tacataagcgtttatcatgataa 12425494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 275
Target Start/End: Complemental strand, 6096535 - 6096434
Alignment:
Q  179 aaaaacaatttaacttaatttt-atattttgctataaaagtagcttatgcataagtgcttattatgataagc----ctataagctgcaaataagttgttt 273  Q
    ||||||||||||||||  |||| |||| | | ||||||| |||||||| ||||||||||||| ||||||||     |||| |||||||||||||||||||    
T  6096535 aaaaacaatttaacttcgtttttatatgtagttataaaaatagcttatacataagtgcttatcatgataagagcttctatgagctgcaaataagttgttt 6096436  T
Q  274 at 275  Q
    ||    
T  6096435 at 6096434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 3932746 - 3932811
Alignment:
Q  164 agcttataacatata---aaaaacaatttaacttaattttatattttgctataaaagtagcttatg 226  Q
    |||||||||||||||   |||||||||| ||||| ||||||| ||||||||||||| |||||||||    
T  3932746 agcttataacatatatacaaaaacaattaaacttcattttatcttttgctataaaaatagcttatg 3932811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 277
Target Start/End: Original strand, 19460465 - 19460570
Alignment:
Q  179 aaaaacaatttaacttaattttatattttgctataaaagtagcttatgcataagtgcttattatgataagc-------ctataagctgcaaataagttgt 271  Q
    |||||||||||||||| |||  || ||||| |||| || ||| |||| ||||||||||||| |||||||||       |||||||||||||||||| |||    
T  19460465 aaaaacaatttaactttattcaatgttttgatatagaaatagtttatacataagtgcttatcatgataagcatttgtgctataagctgcaaataagctgt 19460564  T
Q  272 ttatcc 277  Q
    ||||||    
T  19460565 ttatcc 19460570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 247
Target Start/End: Complemental strand, 7674713 - 7674571
Alignment:
Q  107 tgtttataagtt-ttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatataa-aaaacaatttaacttaattttatat 204  Q
    |||||||||| | ||||| ||||||||||| || || ||||||||||||  | ||| ||  ||||  | ||||| |||||||||||| || ||||||| |    
T  7674713 tgtttataaggtgttttcagcttattttcacaaattctccaagatagcttatgaaaacattttatggcttataagaaaacaatttaaatttattttatct 7674614  T
Q  205 tttgctataaaagtagcttatgcataagtgcttattatgataa 247  Q
    |||| |||| || ||||||||  |||||||||||| |||||||    
T  7674613 tttggtatagaaatagcttatatataagtgcttatcatgataa 7674571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 277
Target Start/End: Original strand, 9202772 - 9202932
Alignment:
Q  125 gcttattttcataagttatccaagatagctatttaaatcagcttataacatataa-aaaacaatttaacttaattttatattttgctataaaagtagctt 223  Q
    ||||||||||||||||| | ||||||| ||  | ||| ||||||||  | ||||  ||||||||||||||| ||||||| |||||||| | || ||||||    
T  9202772 gcttattttcataagttcttcaagataacttatgaaaacagcttattgcttatatgaaaacaatttaactttattttatcttttgctacagaaatagctt 9202871  T
Q  224 atgcataagtgcttattatgataagc-------ctataagctgcaaataagttgtttatcc 277  Q
    ||  |||||  ||||| ||||||| |       |||||||||||||||||| |||||||||    
T  9202872 atatataagcacttatcatgataaacacttgtgctataagctgcaaataagatgtttatcc 9202932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 225
Target Start/End: Complemental strand, 10639999 - 10639898
Alignment:
Q  125 gcttattttcataagttatccaagatagct-atttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttgctataaaagtagct 222  Q
    ||||||||||||||||| ||||| |||| | || |||| || || || ||||||| ||||||||||||| |||||||||| |||||||||| || |||||    
T  10639999 gcttattttcataagttctccaaaatagtttatgtaaa-caactcatcacatatacaaaaacaatttaatttaattttatcttttgctatagaaatagct 10639901  T
Q  223 tat 225  Q
    |||    
T  10639900 tat 10639898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 225
Target Start/End: Complemental strand, 14932297 - 14932235
Alignment:
Q  163 cagcttataacatataaaaaacaatttaacttaattttatattttgctataaaagtagcttat 225  Q
    ||||||||| | |||| ||||||||||||||| ||||||| ||||||||||||| ||| ||||    
T  14932297 cagcttatagcttatacaaaacaatttaactttattttatcttttgctataaaaatagattat 14932235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 16458005 - 16458106
Alignment:
Q  127 ttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttgctataaaagtagcttat 225  Q
    ||||||||| ||||| |||||  |||||  | ||| || |||||| |||||| ||||||||||||| ||| |||||| ||||||||||||| ||||||||    
T  16458005 ttattttcacaagttctccaatttagctcataaaaacaacttatagcatatacaaaaacaatttaagtta-ttttatcttttgctataaaaatagcttat 16458103  T
Q  226 gca 228  Q
    |||    
T  16458104 gca 16458106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 228
Target Start/End: Complemental strand, 29925895 - 29925783
Alignment:
Q  117 ttttttcggcttattttcataagttatccaagatagct-atttaaatcagcttataacatataaa-aaacaatttaacttaattttatattttgctataa 214  Q
    |||||||  |||||||||||||||| ||||| |||||| || |||| || |||||| || ||| | ||||||||||||   ||||||| |||||||||||    
T  29925895 ttttttcaacttattttcataagttctccaatatagcttatgtaaa-caacttatagcacatacagaaacaatttaacgctattttatcttttgctataa 29925797  T
Q  215 aagtagcttatgca 228  Q
    || |||||||||||    
T  29925796 aaatagcttatgca 29925783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 42500304 - 42500353
Alignment:
Q  179 aaaaacaatttaacttaattttatattttgctataaaagtagcttatgca 228  Q
    |||||||||||||||| ||||||| ||||| ||||||| |||||||||||    
T  42500304 aaaaacaatttaactttattttatcttttgatataaaaatagcttatgca 42500353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 24030425 - 24030504
Alignment:
Q  125 gcttattttcataagttatccaagatagctatttaaatcagcttataacatat--aaaaaacaatttaacttaattttat 202  Q
    |||||||||||||||||||| || ||||||  | ||| || ||||||||||||  |||||| |||||||||| |||||||    
T  24030425 gcttattttcataagttatctaatatagcttataaaaacaacttataacatatccaaaaaataatttaactttattttat 24030504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 35446046 - 35445999
Alignment:
Q  179 aaaaacaatttaacttaattttatattttgctataaaagtagcttatg 226  Q
    |||||||||||||||| |||||||  |||||||||||| |||||||||    
T  35446046 aaaaacaatttaactttattttatcatttgctataaaaatagcttatg 35445999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 216
Target Start/End: Original strand, 13697775 - 13697875
Alignment:
Q  117 ttttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatataaaaaacaa--tttaacttaattttatattttgctataa 214  Q
    |||||||  ||||||||||||| || ||||| |||||| | |||| || ||||||| |||||||||| ||  |||||| | ||||||| |||||||||||    
T  13697775 ttttttcaacttattttcataacttctccaacatagct-tataaaacaacttataatatataaaaaaaaaaatttaacattattttatcttttgctataa 13697873  T
Q  215 aa 216  Q
    ||    
T  13697874 aa 13697875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 244
Target Start/End: Complemental strand, 465945 - 465880
Alignment:
Q  179 aaaaacaatttaacttaattttatattttgctataaaagtagcttatgcataagtgcttattatga 244  Q
    |||||||||||||||| ||||||| |||||  ||| || ||||||||  |||||||||||| ||||    
T  465945 aaaaacaatttaactttattttatcttttgtcatagaaatagcttatatataagtgcttatcatga 465880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 4855686 - 4855629
Alignment:
Q  182 aacaatttaacttaattttatattttgctataaaagtagcttatgcataagtgcttat 239  Q
    ||||||||||||| ||||||| ||||| ||||||| ||||| || ||||||| |||||    
T  4855686 aacaatttaactttattttattttttgttataaaaatagctaatacataagtacttat 4855629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 32022053 - 32022004
Alignment:
Q  188 ttaacttaattttatattttgctataaaagtagcttatgcataagtgctt 237  Q
    ||||||| | ||||| ||||||||||||| ||||||||||||||| ||||    
T  32022053 ttaactttaatttatcttttgctataaaactagcttatgcataagcgctt 32022004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 32942659 - 32942606
Alignment:
Q  130 ttttcataagttatccaagatagctatttaaatcagcttataacatataaaaaa 183  Q
    |||||||||||| ||||||||||||  | ||| ||||||||| |||||||||||    
T  32942659 ttttcataagttctccaagatagcttatgaaaacagcttatagcatataaaaaa 32942606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 277
Target Start/End: Complemental strand, 3155655 - 3155489
Alignment:
Q  119 ttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttgctataaaag 217  Q
    ||||| |||||||||||| |||| | |||||||| |  | ||| |||||| || | | || |||||||||||||||| ||||||| |||||||||| ||     
T  3155655 ttttcagcttattttcattagttcttcaagatagtttatgaaaacagcttgtagcttgtacaaaaacaatttaactttattttatcttttgctatagaaa 3155556  T
Q  218 tagcttatgcataagtgcttattatgataagc-------ctataagctgcaaataagttgtttatcc 277  Q
    |||||||| ||||  ||||||| |||||||||       |||||||||||| |||||||||||||||    
T  3155555 tagcttatacatacatgcttatcatgataagcgcttgtactataagctgcagataagttgtttatcc 3155489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 274
Target Start/End: Original strand, 34430715 - 34430854
Alignment:
Q  128 tattttcataagttatccaagatagctatttaaatcagcttataacatataaaaaacaatttaacttaattttatattttgctataaaagtagcttatgc 227  Q
    ||||||||||| || |||||||| ||| || ||| |||||||||| | |||||||| || ||||||| |||||||||| ||||||| || |||||||| |    
T  34430715 tattttcataaattctccaagatggcttttaaaaacagcttataaaaaataaaaaa-aaattaactttattttatattctgctatataaatagcttatac 34430813  T
Q  228 ataagtgcttattatgataagcctataagctgcaaataagttgttta 274  Q
    | ||| |||||  ||||      ||||||||||||||||||||||||    
T  34430814 acaagcgcttaccatga------tataagctgcaaataagttgttta 34430854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 17822889 - 17822967
Alignment:
Q  125 gcttattttcataagttatccaagatagctatttaaatcagcttataacatataaaa-aacaatttaacttaattttat 202  Q
    ||||||||||||||||| ||||||||||||  | ||| || |||||| ||||||||| |||||||||||||||||||||    
T  17822889 gcttattttcataagttctccaagatagcttatgaaaacaacttatagcatataaaataacaatttaacttaattttat 17822967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 29913000 - 29912897
Alignment:
Q  119 ttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatataaaaaacaatttaacttaattttatattttgctataaaagt 218  Q
    ||||| ||||||||| ||||||| ||||||||||||  | ||| |  ||| ||||||||| |||||||||| |||| ||||||| |||||||||| || |    
T  29913000 ttttcagcttatttttataagttgtccaagatagcttatgaaaacgacttttaacatatacaaaacaattttactttattttattttttgctatagaaat 29912901  T
Q  219 agct 222  Q
    ||||    
T  29912900 agct 29912897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 249
Target Start/End: Complemental strand, 51630163 - 51630032
Alignment:
Q  119 ttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatataa-aaaacaatttaacttaattttatattttgctataaaag 217  Q
    ||||| |||||||||||||| || | ||||||||||  | |||  |||||||| | ||||  ||||||||||||||| ||||||| |||||||||| ||     
T  51630163 ttttcagcttattttcataaattcttcaagatagcttatgaaaatagcttatagcttatatcaaaacaatttaactttattttatcttttgctatataaa 51630064  T
Q  218 tagcttatgcataagtgcttattatgataagc 249  Q
    ||||||   || |||||||||| || ||||||    
T  51630063 tagcttgaacacaagtgcttatcataataagc 51630032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 269
Target Start/End: Original strand, 1242354 - 1242457
Alignment:
Q  179 aaaaacaatttaacttaattttatattttgctataaaagtagcttatgc------ataagtgcttattatgataagc-------ctataagctgcaaata 265  Q
    ||||| |||||||| | ||||| ||||||||||||||| ||||||||||      ||||||||||||||||||||||       ||||||||||||||||    
T  1242354 aaaaataatttaacgttattttctattttgctataaaaatagcttatgcttataaataagtgcttattatgataagcacttatactataagctgcaaata 1242453  T
Q  266 agtt 269  Q
    ||||    
T  1242454 agtt 1242457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 41336764 - 41336703
Alignment:
Q  167 ttataacatata-aaaaacaatttaacttaattttatattttgctataaaagtagcttatgca 228  Q
    |||||||||||| |||||||||||||||| ||||||| ||| ||||||||| |||||||||||    
T  41336764 ttataacatatacaaaaacaatttaactttattttatcttt-gctataaaaatagcttatgca 41336703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 277
Target Start/End: Original strand, 1203208 - 1203296
Alignment:
Q  191 acttaattttatattttgctataaaagtagcttatgcataagtgcttattatgataagcc--tataagctgcaaataagttgtttatcc 277  Q
    |||| ||||||| |||||||||| || |||||||| || || ||||| | |||||||||   |||||||||||||||| ||||||||||    
T  1203208 actttattttatgttttgctatagaaatagcttatacaaaaatgcttttcatgataagcacttataagctgcaaataaattgtttatcc 1203296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 43505947 - 43505898
Alignment:
Q  179 aaaaacaatttaacttaattttatattttgctataaaagtagcttatgca 228  Q
    |||||||||||||| | ||||||| ||||||||||||| |||||||||||    
T  43505947 aaaaacaatttaacgttattttatcttttgctataaaaatagcttatgca 43505898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 9760484 - 9760384
Alignment:
Q  127 ttattttcataagttatccaagatagctatttaaatcagcttataacata-taaaaaacaatttaacttaattttatattttgctataaaagtagcttat 225  Q
    ||||||||||||||| ||||| ||||||  | ||| || |||||| |||| ||||||| |||||||||| ||||||| |||| | |||||| || |||||    
T  9760484 ttattttcataagttctccaatatagcttataaaaacaacttatagcatattaaaaaagaatttaactttattttatctttttcaataaaaataacttat 9760385  T
Q  226 g 226  Q
    |    
T  9760384 g 9760384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 228
Target Start/End: Complemental strand, 20109063 - 20108951
Alignment:
Q  117 ttttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttgctataaa 215  Q
    |||||||| || ||||||| ||||| || || ||| ||  | ||| ||||||||| |||||| |||||||| ||||||| ||||||| |||| || ||||    
T  20109063 ttttttcgactcattttcaaaagttctctaatatatcttataaaaacagcttataccatatacaaaaacaacttaacttcattttatcttttcctctaaa 20108964  T
Q  216 agtagcttatgca 228  Q
    | |||||||||||    
T  20108963 actagcttatgca 20108951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 7601761 - 7601690
Alignment:
Q  169 ataacatata-aaaaacaatttaacttaattttatattttgctataaaagtagcttatgcataagtgcttat 239  Q
    |||||||||| |||||||||||||||| |||||||  |||||||||  | |||||||| |||||| ||||||    
T  7601761 ataacatatacaaaaacaatttaactttattttatcctttgctataggaatagcttatacataagcgcttat 7601690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 224
Target Start/End: Complemental strand, 17884133 - 17884014
Alignment:
Q  107 tgtttataagtt-ttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatat 204  Q
    |||| ||||||| ||||| ||| ||||||||||| | ||||| ||||||  | ||| || || ||||| |||| |||||||||||||||| ||||||| |    
T  17884133 tgttcataagttgttttcagctaattttcataagctctccaatatagcttatgaaaacaactgataacttatacaaaaacaatttaactttattttatct 17884034  T
Q  205 tttgctataaaagtagctta 224  Q
    |||| |||| || |||||||    
T  17884033 tttgttatagaaatagctta 17884014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 13216274 - 13216320
Alignment:
Q  170 taacatataaaaaacaatttaacttaattttatattttgctataaaa 216  Q
    ||||||||| ||||| ||||||||| ||||||| |||||||||||||    
T  13216274 taacatatagaaaacgatttaactttattttatcttttgctataaaa 13216320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 249
Target Start/End: Complemental strand, 23503550 - 23503480
Alignment:
Q  179 aaaaacaatttaacttaattttatattttgctataaaagtagcttatgcataagtgcttattatgataagc 249  Q
    ||||| |||||||||| ||||||||||||| |||| || ||| |||| ||||||  ||||| |||||||||    
T  23503550 aaaaataatttaactttattttatattttgttatagaattagattatacataagcacttatcatgataagc 23503480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 40174553 - 40174486
Alignment:
Q  180 aaaacaatttaacttaattttatattttgctataaaagtagcttatgcataagtgcttattatgataagc 249  Q
    ||||||||||||||| | ||||| ||||||||||||  |||||||| ||||||||| |||  ||||||||    
T  40174553 aaaacaatttaactttaatttattttttgctataaa--tagcttatacataagtgcatatcgtgataagc 40174486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 403518 - 403473
Alignment:
Q  179 aaaaacaatttaacttaattttatattttgctataaaagtagctta 224  Q
    |||||||||||||| | ||||||| |||||||||||||||| ||||    
T  403518 aaaaacaatttaacgttattttatcttttgctataaaagtaactta 403473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 207
Target Start/End: Complemental strand, 679708 - 679679
Alignment:
Q  178 aaaaaacaatttaacttaattttatatttt 207  Q
    ||||||||||||||||||||||||||||||    
T  679708 aaaaaacaatttaacttaattttatatttt 679679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 3175941 - 3175896
Alignment:
Q  180 aaaacaatttaacttaattttatattttgctataaaagtagcttat 225  Q
    |||||||||| |||| ||||||| |||||||||| |||||||||||    
T  3175941 aaaacaatttgactttattttatcttttgctatagaagtagcttat 3175896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 210
Target Start/End: Complemental strand, 42685489 - 42685384
Alignment:
Q  107 tgtttataagtt-ttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatat-aaaaaacaatttaacttaattttatat 204  Q
    |||||||||||| |||| |||||||||||| | ||| ||||| ||||||  | ||| || |||| | | ||| ||||||||||||||||| ||||||| |    
T  42685489 tgtttataagttgtttttggcttattttcacacgttctccaaaatagcttatgaaaacaacttagagcttataaaaaaacaatttaacttcattttatct 42685390  T
Q  205 tttgct 210  Q
    ||||||    
T  42685389 tttgct 42685384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 234
Target Start/End: Original strand, 54392844 - 54392952
Alignment:
Q  126 cttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttgctataaaagtagctta 224  Q
    |||||||||| || || ||||||||| ||  ||||| ||||| ||| |||||| |||||||||||||||| | ||||| ||||  |||| || |||||||    
T  54392844 cttattttcaaaatttctccaagatatcttattaaaacagctaatagcatatacaaaaacaatttaacttta-tttattttttattatagaaatagctta 54392942  T
Q  225 tgcataagtg 234  Q
    | ||||||||    
T  54392943 tacataagtg 54392952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 232
Target Start/End: Complemental strand, 2996627 - 2996511
Alignment:
Q  117 ttttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttgctataaa 215  Q
    |||||||  |||||||||||| | | ||||||||||||  | ||| || |||||||| |||| ||||||||||| |||  ||||||| || || |||  |    
T  2996627 ttttttcaacttattttcatacgctctccaagatagcttatgaaaacaacttataacttatataaaaacaatttgactgtattttatcttatgttatcga 2996528  T
Q  216 agtagcttatgcataag 232  Q
    |||||||||| ||||||    
T  2996527 agtagcttattcataag 2996511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 6364134 - 6364070
Alignment:
Q  185 aatttaacttaattttatattttgctataaaagtagcttatgcataagtgcttattatgataagc 249  Q
    ||||| |||| ||||||| ||||| |||| || |||||||| |||||||||||||  ||||||||    
T  6364134 aatttcactttattttatcttttgttatagaaatagcttatacataagtgcttatcttgataagc 6364070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 25904272 - 25904336
Alignment:
Q  163 cagcttataacatataaaaaa-caatttaacttaattttatattttgctataaaagtagcttatg 226  Q
    ||||||||| || ||| |||| ||||||||||| ||||||| ||||||| ||||| |||||||||    
T  25904272 cagcttatagcaaatacaaaatcaatttaactttattttatcttttgctgtaaaaatagcttatg 25904336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 154
Target Start/End: Complemental strand, 49202714 - 49202662
Alignment:
Q  103 acattgtttataagtt-ttttcggcttattttcataagttatccaagatagct 154  Q
    |||||||| ||||||| |||||  ||||||||||| |||||||||||||||||    
T  49202714 acattgttcataagttgttttcaacttattttcattagttatccaagatagct 49202662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 234
Target Start/End: Complemental strand, 56480392 - 56480284
Alignment:
Q  127 ttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttgctataaaagtagcttat 225  Q
    ||||||||||||| | |||||||||| |  | ||| ||||||||||| |||| | |||||||||||||| ||||| | ||||| |||  || ||||||||    
T  56480392 ttattttcataagctctccaagatagtttatgaaaacagcttataacttatacataaacaatttaactttattttgtcttttgttatggaaatagcttat 56480293  T
Q  226 gcataagtg 234  Q
     | ||||||    
T  56480292 acgtaagtg 56480284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 277
Target Start/End: Original strand, 41475140 - 41475244
Alignment:
Q  180 aaaacaatttaacttaattttatattttgctataaaagtagcttatgcataagtgcttattatgataag-------cctataagctgcaaataagttgtt 272  Q
    ||||||||||||||  ||||||| ||||||||||||| |||||||| ||||||||||||| |||| |||       | |||||| |||||||||||||||    
T  41475140 aaaacaatttaactgtattttatcttttgctataaaattagcttatacataagtgcttatcatgacaagtgtttgtcttataagttgcaaataagttgtt 41475239  T
Q  273 tatcc 277  Q
    |||||    
T  41475240 tatcc 41475244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 232
Target Start/End: Complemental strand, 10114541 - 10114428
Alignment:
Q  119 ttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttgctataaaag 217  Q
    ||||| ||||||||||||| ||| ||||| ||||||| | ||| ||||||||| | ||||  ||||||||| ||||| ||||||| |||||||||| ||     
T  10114541 ttttcagcttattttcatatgttctccaatatagctaatgaaaacagcttatagcttataccaaaacaattcaactt-attttatcttttgctatagaaa 10114443  T
Q  218 tagcttatgcataag 232  Q
    |||||||| ||||||    
T  10114442 tagcttatacataag 10114428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 226
Target Start/End: Original strand, 1058077 - 1058200
Alignment:
Q  102 gacattgtttataagttttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaatttt 200  Q
    |||||| || || ||||||||| ||||||||||||||||| |||||||||  | |  |||| |||||||| |||||| |||||||  ||||||| |||||    
T  1058077 gacatttttcattagttttttccgcttattttcataagttctccaagata-atgtgaaaat-agcttatagcatatacaaaaacagattaactttatttt 1058174  T
Q  201 atattttgctataaaagtagcttatg 226  Q
    ||  |||||||||||| |||||||||    
T  1058175 atgatttgctataaaaatagcttatg 1058200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 12497293 - 12497359
Alignment:
Q  163 cagcttataacatata-aaaaacaatttaacttaattttatattttgctataaaagtagcttatgca 228  Q
    ||||||||| |||||| |||||||| ||||||| ||||||| ||||||||||||| | |||||||||    
T  12497293 cagcttatagcatatacaaaaacaagttaactttattttatcttttgctataaaaatggcttatgca 12497359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 226
Target Start/End: Original strand, 35534629 - 35534736
Alignment:
Q  117 ttttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatataaaaaacaatttaacttaattttatattttgctataaaa 216  Q
    ||||||||||||| ||||||||||| ||||| ||| ||  | ||| || | |||||||||  |||||||||||||||| ||||||| |||| ||||||||    
T  35534629 ttttttcggcttactttcataagttctccaatataacttatgaaaacaacatataacata-caaaaacaatttaactttattttatctttt-ctataaaa 35534726  T
Q  217 gtagcttatg 226  Q
     || ||||||    
T  35534727 atatcttatg 35534736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 7026721 - 7026669
Alignment:
Q  180 aaaacaatttaacttaattttatattttgctataaaagtagcttatgcataag 232  Q
    |||||||||| |||| ||||||| ||||| ||||| |||||||||||||||||    
T  7026721 aaaacaattttactttattttatcttttgttataacagtagcttatgcataag 7026669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 194
Target Start/End: Complemental strand, 27028883 - 27028807
Alignment:
Q  119 ttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaactt 194  Q
    ||||| ||||||||||||||| | ||||||||||||  | ||| ||||||||| |||||| | ||||||||||||||    
T  27028883 ttttcagcttattttcataagctctccaagatagcttatgaaaacagcttatagcatatacacaaacaatttaactt 27028807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 213
Target Start/End: Original strand, 29168921 - 29169005
Alignment:
Q  130 ttttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttgctata 213  Q
    |||||||||||| ||||| ||| ||    ||| |||||||||||||||| ||||| ||||||| |||||||||| ||||||||||    
T  29168921 ttttcataagttttccaatataacttaggaaaacagcttataacatatacaaaaataatttaatttaattttatcttttgctata 29169005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 14280481 - 14280540
Alignment:
Q  180 aaaacaatttaacttaattttatattttgctataaaagtagcttatgcataagtgcttat 239  Q
    |||||||||||| |||||||||| |||||||||| || ||| |||| |||||| ||||||    
T  14280481 aaaacaatttaatttaattttatcttttgctatagaaataggttatacataagcgcttat 14280540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 12976211 - 12976157
Alignment:
Q  173 catataaaaaac-aatttaacttaattttatattttgctataaaagtagcttatg 226  Q
    |||||||||||  |||||||||| |||||||||||||||||| || |||||||||    
T  12976211 catataaaaaattaatttaactttattttatattttgctatagaaatagcttatg 12976157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 30251478 - 30251531
Alignment:
Q  125 gcttattttcataagttatccaagatagctatttaaatcagcttataacatata 178  Q
    ||||||||||||||||  ||||||||||||  | ||| ||||||||||||||||    
T  30251478 gcttattttcataagtggtccaagatagcttatgaaaacagcttataacatata 30251531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 204
Target Start/End: Complemental strand, 18133710 - 18133622
Alignment:
Q  117 ttttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatat 204  Q
    ||||||| ||||||||||||||||| ||||| |||| |  | ||| |||||||||  ||||| |||| ||||||||||| |||| ||||    
T  18133710 ttttttcagcttattttcataagttctccaatatagtttataaaaccagcttataggatatacaaaagcaatttaacttcatttgatat 18133622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 37444495 - 37444563
Alignment:
Q  180 aaaacaatttaacttaattttatattttgctataaaagtagcttatgcataagtgcttattatgataag 248  Q
    ||||||||||||||| | ||||| ||||| ||||  | |||||||| |||||| |||||| ||||||||    
T  37444495 aaaacaatttaactttactttatcttttgttatagtaatagcttatacataagcgcttatcatgataag 37444563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 222
Target Start/End: Complemental strand, 39280016 - 39279910
Alignment:
Q  117 ttttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatataaa-aaacaatttaacttaattttatattttgctataaa 215  Q
    ||||||| ||||||||||| ||||| |||||||||  |  | |||||||| ||||||||||| | |||||||||||||||||||||| |||||| ||| |    
T  39280016 ttttttcagcttattttcaaaagttctccaagataatttatgaaatcagcctataacatatacacaaacaatttaacttaattttatcttttgcaataga 39279917  T
Q  216 agtagct 222  Q
    | |||||    
T  39279916 aatagct 39279910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 9210641 - 9210570
Alignment:
Q  157 ttaaatcagcttataacatataaaaaacaatttaacttaattttatattttgctataaaagtagcttatgca 228  Q
    ||||| || |||||| ||||||||||| |||||||| | ||||||| |||| ||||||||||||||||||||    
T  9210641 ttaaaacaacttatagcatataaaaaagaatttaacatcattttatttttttctataaaagtagcttatgca 9210570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 40252131 - 40252233
Alignment:
Q  125 gcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttgctataaaagtagctt 223  Q
    ||||||||||||||||| ||||||||| ||  | |||  ||||||||||||||| |||||| |||||||||  ||||||  ||||| |||||| ||||||    
T  40252131 gcttattttcataagttctccaagataacttatgaaaagagcttataacatatacaaaaacgatttaactttgttttatcatttgcaataaaactagctt 40252230  T
Q  224 atg 226  Q
    |||    
T  40252231 atg 40252233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 48470090 - 48469988
Alignment:
Q  125 gcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttgctataaaagtagctt 223  Q
    |||||| |||||||||||| ||| ||||||  | ||| || ||||||  ||||| |||||||||||||||||||||||| ||||||| || || ||||||    
T  48470090 gcttatgttcataagttattcaaaatagcttatgaaaacaacttatattatatacaaaaacaatttaacttaattttatcttttgctgtagaaatagctt 48469991  T
Q  224 atg 226  Q
    |||    
T  48469990 atg 48469988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 125 - 248
Target Start/End: Complemental strand, 47177682 - 47177558
Alignment:
Q  125 gcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttgctataaaagtagctt 223  Q
    |||||||||||||| || |||||||||||| || ||| ||||||||| | ||||  |||||||||||||||  |||| ||||||| |||| || || |||    
T  47177682 gcttattttcataaattctccaagatagcttttgaaaacagcttatagcttatatgaaaacaatttaactttgttttgtattttgatatagaaatacctt 47177583  T
Q  224 atgcataagtgcttattatgataag 248  Q
    || || ||| |||||| || |||||    
T  47177582 atacagaagggcttatcatcataag 47177558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 221
Target Start/End: Complemental strand, 20526492 - 20526395
Alignment:
Q  125 gcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttgctataaaagtagc 221  Q
    |||||||||||| |||| ||||| ||||||  | ||| ||||||||| ||| || ||| | |||||||||| ||||||| |||||||||| |||||||    
T  20526492 gcttattttcattagttctccaaaatagcttatgaaaacagcttatagcatgtacaaacataatttaactttattttatcttttgctatataagtagc 20526395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 40689010 - 40689099
Alignment:
Q  125 gcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttgctata 213  Q
    |||||||||||||||||||||| |||||||  | ||  ||||||||| | ||||  |||| |||||||||| ||||||| ||||||||||    
T  40689010 gcttattttcataagttatccaggatagcttatgaacacagcttatagcttatatgaaaataatttaactttattttatcttttgctata 40689099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 216
Target Start/End: Complemental strand, 20269630 - 20269530
Alignment:
Q  117 ttttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttgctataaa 215  Q
    |||||||  ||||||||||||| || ||||| | ||||   |||| || |||||||||| || ||||||||||||||||  |||||| ||||||||||||    
T  20269630 ttttttcaacttattttcataaattctccaatacagcttagtaaaacaacttataacatttacaaaaacaatttaactttgttttatcttttgctataaa 20269531  T
Q  216 a 216  Q
    |    
T  20269530 a 20269530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 199
Target Start/End: Original strand, 17944359 - 17944442
Alignment:
Q  117 ttttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattt 199  Q
    ||||||| ||||| |||||||| |||||||||||| ||  | ||| || |||| |||||||| |||||||||||||||| ||||    
T  17944359 ttttttcagcttaatttcataaattatccaagataacttatgaaaacaacttacaacatatacaaaaacaatttaactttattt 17944442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 191
Target Start/End: Original strand, 46280288 - 46280363
Alignment:
Q  117 ttttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaa 191  Q
    ||||||| || |||||||||||||| ||||| ||||||  | ||| ||||||||| |||||| |||||||||||||    
T  46280288 ttttttcagcctattttcataagttctccaatatagcttataaaaacagcttatagcatatacaaaaacaatttaa 46280363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 28613599 - 28613665
Alignment:
Q  166 cttataacatata-aaaaacaatttaacttaattttatattttgctataaaagtagcttatgcataa 231  Q
    |||||||| |||| ||||||||||||||||  |||||| ||||| ||||||| |||||||| |||||    
T  28613599 cttataacttatacaaaaacaatttaactttgttttatcttttgttataaaaatagcttatacataa 28613665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 45806408 - 45806454
Alignment:
Q  182 aacaatttaacttaattttatattttgctataaaagtagcttatgca 228  Q
    ||||||||||| | ||||||| ||||||||||||| |||||||||||    
T  45806408 aacaatttaacgttattttatcttttgctataaaaatagcttatgca 45806454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 239
Target Start/End: Complemental strand, 12110404 - 12110291
Alignment:
Q  127 ttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttgctataaaagtagcttat 225  Q
    ||||||||||||||| | ||||||||||  | ||| ||||||||| | ||||  |||||||||| |||| ||||||| || ||  ||| || ||| ||||    
T  12110404 ttattttcataagttcttcaagatagcttatgaaaacagcttatagcttataccaaaacaatttgactttattttatcttgtgtaatagaaataggttat 12110305  T
Q  226 gcataagtgcttat 239  Q
     |||||||||||||    
T  12110304 tcataagtgcttat 12110291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 248
Target Start/End: Complemental strand, 40009461 - 40009392
Alignment:
Q  179 aaaaacaatttaacttaattttatattttgctataaaagtagcttatgcataagtgcttattatgataag 248  Q
    |||||||||||||||| ||||| | ||||| |||||||  ||||||| |||||| ||| || ||||||||    
T  40009461 aaaaacaatttaactttattttgtcttttgttataaaaacagcttatacataagcgctaatcatgataag 40009392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 45004753 - 45004708
Alignment:
Q  183 acaatttaacttaattttatattttgctataaaagtagcttatgca 228  Q
    |||||||||||| ||||||| ||||||||||||| ||| |||||||    
T  45004753 acaatttaactttattttatcttttgctataaaaatagtttatgca 45004708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 20880522 - 20880421
Alignment:
Q  125 gcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttgctataaaagtagctt 223  Q
    ||||||||||||||||| ||||| |||||| || ||| ||| ||||| |||||| ||||||||||||||||  ||||||  |||||||||||| ||||||    
T  20880522 gcttattttcataagttctccaatatagcttttaaaaacagtttatagcatatacaaaaacaatttaactt-gttttatcatttgctataaaaatagctt 20880424  T
Q  224 atg 226  Q
    |||    
T  20880423 atg 20880421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 232
Target Start/End: Original strand, 39602235 - 39602341
Alignment:
Q  126 cttattttcataagttatccaagatagctatttaaatcagcttataacatataaaaaacaatttaacttaattttatattttgctataaaagtagcttat 225  Q
    |||||||||||||||| || |||||||||  | ||| ||||||||||| ||||   ||||||||||||| || |||| |||| ||||| || ||||||||    
T  39602235 cttattttcataagttctcaaagatagcttatgaaaacagcttataacttatacgcaacaatttaactttatgttatctttttctatagaaatagcttat 39602334  T
Q  226 gcataag 232  Q
    |||||||    
T  39602335 gcataag 39602341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 30956659 - 30956752
Alignment:
Q  134 cataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttgctataaaagtagcttatg 226  Q
    |||||||| |||||||||||| || ||| || |||||| | |||| |||||||||||||||| ||||||| |||||||||| || |||||||||    
T  30956659 cataagttctccaagatagcttttgaaaacaacttatagcctatacaaaaacaatttaactttattttatcttttgctatagaaatagcttatg 30956752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 30972471 - 30972564
Alignment:
Q  134 cataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttgctataaaagtagcttatg 226  Q
    |||||||| |||||||||||| || ||| || |||||| | |||| |||||||||||||||| ||||||| |||||||||| || |||||||||    
T  30972471 cataagttctccaagatagcttttgaaaacaacttatagcctatacaaaaacaatttaactttattttatcttttgctatagaaatagcttatg 30972564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 277
Target Start/End: Original strand, 34235155 - 34235260
Alignment:
Q  179 aaaaacaatttaacttaattttatattttgctataaaagtagcttatgcataagtgcttattatgataagc-------ctataagctgcaaataagttgt 271  Q
    ||||| || ||||||| |||||||||||||||||  || |||||| | ||||||||||||| |||||||||       ||||||||| ||||||||||||    
T  34235155 aaaaaaaaattaactttattttatattttgctatggaaatagcttctacataagtgcttatcatgataagcacatgtactataagctacaaataagttgt 34235254  T
Q  272 ttatcc 277  Q
    ||||||    
T  34235255 ttatcc 34235260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 223
Target Start/End: Complemental strand, 2719514 - 2719416
Alignment:
Q  125 gcttattttcataagttatccaagatagctatttaaatcagcttataacatataaaaaacaatttaacttaattttatattttgctataaaagtagctt 223  Q
    ||||||||||||||||| ||||||||||||  | ||| ||| ||||| | || | |||||||||| |||| ||||||||||||||| || || ||||||    
T  2719514 gcttattttcataagttctccaagatagcttatgaaaacagtttatagcttaaacaaaacaatttcactttattttatattttgctttagaaatagctt 2719416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 10704652 - 10704699
Alignment:
Q  179 aaaaacaatttaacttaattttatattttgctataaaagtagcttatg 226  Q
    |||||||||||||| | ||||||| |||||||||||||||||||||||    
T  10704652 aaaaacaatttaacatcattttatcttttgctataaaagtagcttatg 10704699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 226
Target Start/End: Original strand, 3845578 - 3845688
Alignment:
Q  117 ttttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttgctataaa 215  Q
    ||||||| ||||||||||||||||| ||||||||| ||  | ||| |||| | || |||||| ||||||| || ||||||||||||| |||  ||||| |    
T  3845578 ttttttcagcttattttcataagttctccaagataacttatgaaaacagcatgtagcatatagaaaaacatttcaacttaattttatctttctctataga 3845677  T
Q  216 agtagcttatg 226  Q
    | |||||||||    
T  3845678 aatagcttatg 3845688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 269
Target Start/End: Original strand, 7814218 - 7814321
Alignment:
Q  179 aaaaacaatttaacttaattttatattttgctataaaagtagcttatgc------ataagtgcttattatgataagc-------ctataagctgcaaata 265  Q
    ||||| |||||||| | ||||| ||||||||||||||| ||||||||||      ||||||||||||||||||||||       ||||||||||||||||    
T  7814218 aaaaataatttaacgttattttctattttgctataaaaatagcttatgcttataaataagtgcttattatgataagcacttatactataagctgcaaata 7814317  T
Q  266 agtt 269  Q
    ||||    
T  7814318 agtt 7814321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 228
Target Start/End: Original strand, 12862281 - 12862375
Alignment:
Q  134 cataagttatccaagatagctatttaaatcagcttataacatataaaaaacaatttaacttaattttatattttgctataaaagtagcttatgca 228  Q
    |||||||| ||||| ||||||  | ||| || |||||| |||||| |||||||||||| |  ||||||| ||||||||||||| ||| |||||||    
T  12862281 cataagttctccaatatagcttatgaaaacaacttatagcatatacaaaacaatttaaatctattttatcttttgctataaaaatagattatgca 12862375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 16073105 - 16073171
Alignment:
Q  163 cagcttataacatata-aaaaacaatttaacttaattttatattttgctataaaagtagcttatgca 228  Q
    |||||||||||||||| |||||| |||||| |||||||||  |||||||||| || |||||||||||    
T  16073105 cagcttataacatatacaaaaactatttaaattaattttaacttttgctatagaaatagcttatgca 16073171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 30443947 - 30443861
Alignment:
Q  117 ttttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttat 202  Q
    ||||||| ||||||||||||||||| ||||| |||| |  | ||| ||||||||| |||||| |||| ||||||||||| |||||||    
T  30443947 ttttttcagcttattttcataagttctccaatatagtttataaaaacagcttatagcatatacaaaagcaatttaacttcattttat 30443861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 225
Target Start/End: Complemental strand, 14145958 - 14145857
Alignment:
Q  125 gcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttgctataaaagtagctt 223  Q
    |||||||||||||||| |||||||||||||  | |||  | |||||| ||||||  ||||||||||||||| ||||||| || || ||||||| | ||||    
T  14145958 gcttattttcataagtaatccaagatagcttatgaaaataacttatagcatatacgaaaacaatttaactttattttatcttctgttataaaacttgctt 14145859  T
Q  224 at 225  Q
    ||    
T  14145858 at 14145857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 224
Target Start/End: Original strand, 36631067 - 36631175
Alignment:
Q  117 ttttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttgctataaa 215  Q
    ||||||| ||||||||||||||||| ||||| ||||||  | ||| || |||||| ||| || |||||||||||||||| | |||||  ||| ||||| |    
T  36631067 ttttttctgcttattttcataagttctccaatatagctcataaaaacaacttatagcatgtacaaaaacaatttaactttactttatcctttactataga 36631166  T
Q  216 agtagctta 224  Q
    | |||||||    
T  36631167 aatagctta 36631175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 44061102 - 44061162
Alignment:
Q  179 aaaaacaatttaacttaattttatattttgctataaaagtagcttatgcataagtgcttat 239  Q
    |||||||||||||| | ||||||| |||||||||| || |||||||| || ||||||||||    
T  44061102 aaaaacaatttaaccttattttatcttttgctatagaaatagcttatacagaagtgcttat 44061162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 21661504 - 21661445
Alignment:
Q  180 aaaacaatttaacttaattttatattttgctataaaagtagcttatgcataagtgcttat 239  Q
    |||||||||||| |||||||||||||||| |||  || |||||||| |||||||| ||||    
T  21661504 aaaacaatttaatttaattttatattttgttattgaaatagcttatacataagtgtttat 21661445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 36189610 - 36189528
Alignment:
Q  127 ttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttg 208  Q
    ||||||||||||||| ||||| ||| ||  | |||  |||||||| |||||| |||||||||||||||| ||||||| |||||    
T  36189610 ttattttcataagttctccaatatatcttataaaaatagcttatatcatatacaaaaacaatttaactttattttatcttttg 36189528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 31403348 - 31403279
Alignment:
Q  180 aaaacaatttaacttaattttatattttgctataaaagtagcttatgcataagtgcttattatgataagc 249  Q
    |||||| |||||||| ||||||| ||||| |||  || ||||||||  |||||||||||| |||||||||    
T  31403348 aaaacattttaacttcattttatcttttgatatggaaatagcttatatataagtgcttatgatgataagc 31403279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 248
Target Start/End: Original strand, 32095270 - 32095338
Alignment:
Q  179 aaaaacaatttaacttaattttatattttgctataaaagtagcttatgcataagtgcttattatgataag 248  Q
    |||||||||||||||||||||||| ||||| |||| || || |||||  || |||||||| |||||||||    
T  32095270 aaaaacaatttaacttaattttatcttttgttatagaaataacttatatatgagtgctta-tatgataag 32095338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 226
Target Start/End: Original strand, 12464489 - 12464599
Alignment:
Q  117 ttttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttgctataaa 215  Q
    ||||||| ||||||||||| ||||| ||||||||||||  | |||  |||||||| |||||| |||||||||||||||| ||||||| |||| ||| | |    
T  12464489 ttttttcagcttattttcacaagttctccaagatagcttatgaaaatagcttatagcatatacaaaaacaatttaactttattttatctttttctacaga 12464588  T
Q  216 agtagcttatg 226  Q
    | |||||||||    
T  12464589 aatagcttatg 12464599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 249
Target Start/End: Original strand, 42420359 - 42420443
Alignment:
Q  166 cttataacatata-aaaaacaatttaacttaattttatattttgctataaaagtagcttatgcataagtgcttattatgataagc 249  Q
    |||||| |||||| |||||||||||||| | ||||||| ||||||||||||| |||||||| | |||| |||||| |||||||||    
T  42420359 cttatatcatatacaaaaacaatttaacgttattttatcttttgctataaaaatagcttatacgtaagcgcttatcatgataagc 42420443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 125 - 232
Target Start/End: Complemental strand, 3611272 - 3611164
Alignment:
Q  125 gcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttgctataaaagtagctt 223  Q
    ||||||||||||||||| ||||||||||||  | ||| |||  |||||  |||| |||||||||||||||| ||||||  |||||||||| || || |||    
T  3611272 gcttattttcataagttctccaagatagcttgtgaaaacagtctataaactatacaaaaacaatttaactttattttaccttttgctatagaaataactt 3611173  T
Q  224 atgcataag 232  Q
    || ||||||    
T  3611172 atacataag 3611164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 249
Target Start/End: Complemental strand, 4026869 - 4026738
Alignment:
Q  119 ttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttgctataaaag 217  Q
    ||||| ||||||||||||||||| | || ||||  |  | ||| ||||||||||  |||  ||||| |||||||||| ||||||| |||||||||||||     
T  4026869 ttttcagcttattttcataagttcttcaggataatttatgaaaacagcttataatttatgcaaaaataatttaactttattttatcttttgctataaaaa 4026770  T
Q  218 tagcttatgcataagtgcttattatgataagc 249  Q
    ||||||||  |||||  ||||| |||||||||    
T  4026769 tagcttatagataagcacttatcatgataagc 4026738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 228
Target Start/End: Complemental strand, 32592631 - 32592529
Alignment:
Q  126 cttattttcataagttatccaagatagctatttaaatcagcttataacatataaaaaacaatttaacttaattttatattttgctataaaagtagcttat 225  Q
    |||||||||||||||| ||||| || |||  | ||| || |||||| | |||| ||||||||||||| | ||||||| |||| |||||||| ||| ||||    
T  32592631 cttattttcataagttctccaatattgcttataaaaacaacttatagcgtatacaaaacaatttaacattattttatctttttctataaaaatagtttat 32592532  T
Q  226 gca 228  Q
    |||    
T  32592531 gca 32592529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 7928298 - 7928351
Alignment:
Q  101 ggacattgtttataagtt-ttttcggcttattttcataagttatccaagatagc 153  Q
    |||||||||| ||||||| ||||| ||||||||||||||||| |||||||||||    
T  7928298 ggacattgttcataagttgttttcagcttattttcataagttctccaagatagc 7928351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 39567892 - 39567824
Alignment:
Q  181 aaacaatttaacttaattttatattttgctataaaagtagcttatgcataagtgcttattatgataagc 249  Q
    |||||||||||||| ||||||| ||||| |||| || || ||||| || |||||||||| |||||||||    
T  39567892 aaacaatttaactttattttatcttttgttatagaaatatcttatacacaagtgcttatcatgataagc 39567824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 246
Target Start/End: Original strand, 36114602 - 36114669
Alignment:
Q  179 aaaaacaatttaacttaattttatattttgctataaaagtagcttatgcataagtgcttattatgata 246  Q
    |||||||||||||||| ||||||| ||||| |||| || ||| |||||||||||  ||||| ||||||    
T  36114602 aaaaacaatttaactttattttatcttttgttatagaactaggttatgcataagcacttatcatgata 36114669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 42457939 - 42457872
Alignment:
Q  179 aaaaacaatttaacttaattttatattttgctataaaagtagcttatgcataagtgcttattatgata 246  Q
    |||||||||||||||| ||||||| |||| ||||| || ||| |||| ||||| ||||||| ||||||    
T  42457939 aaaaacaatttaactttattttatcttttactatagaaatagattatacataaatgcttatcatgata 42457872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 228
Target Start/End: Original strand, 43279545 - 43279655
Alignment:
Q  117 ttttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatataaaaaacaatttaacttaattttatattttgctataaaa 216  Q
    |||||||  |||||||||| ||||| ||||| ||||||  | ||| || |||||| |||| |||| ||||||| || | ||||||| ||||| |||||||    
T  43279545 ttttttcaacttattttcacaagttctccaatatagcttataaaaacaacttatagcatacaaaa-acaatttcacattattttatcttttgatataaaa 43279643  T
Q  217 gtagcttatgca 228  Q
     |||||||||||    
T  43279644 atagcttatgca 43279655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 7928376 - 7928442
Alignment:
Q  182 aacaatttaacttaattttatattttgctataaaagtagcttatgcataagtgcttattatgataag 248  Q
    |||||||| | |||||||||| |||||| ||| || |||||||| ||||||||||||| | ||||||    
T  7928376 aacaatttgatttaattttatcttttgcaatagaaatagcttattcataagtgcttatcaagataag 7928442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 207
Target Start/End: Complemental strand, 18066173 - 18066091
Alignment:
Q  126 cttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatatttt 207  Q
    ||||||||| |||||| ||||||||||||  | ||| ||||||||| | ||||  ||||||||||||||| |||| |||||||    
T  18066173 cttattttcttaagttctccaagatagcttatgaaaacagcttatagcttatatgaaaacaatttaactttatttcatatttt 18066091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 20952409 - 20952343
Alignment:
Q  117 ttttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatataaaaaa 183  Q
    |||||||  |||||||||||||||| ||||| ||||||| | ||| || |||||| |||||||||||    
T  20952409 ttttttcaacttattttcataagttctccaatatagctaataaaaacaacttatagcatataaaaaa 20952343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 226
Target Start/End: Original strand, 41241148 - 41241258
Alignment:
Q  117 ttttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttgctataaa 215  Q
    ||||||| ||||| ||||| ||||| ||||||||| ||    ||| |  |||||| |||||| |||||||||||||||| ||||||| |||| ||||| |    
T  41241148 ttttttcagcttaatttcacaagttttccaagataacttaggaaaactacttatagcatatacaaaaacaatttaacttcattttatcttttcctataga 41241247  T
Q  216 agtagcttatg 226  Q
    | |||||||||    
T  41241248 aatagcttatg 41241258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 3102672 - 3102631
Alignment:
Q  191 acttaattttatattttgctataaaagtagcttatgcataag 232  Q
    |||| ||||||||||||||||||||| |||||||| ||||||    
T  3102672 actttattttatattttgctataaaaatagcttatacataag 3102631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 10619295 - 10619364
Alignment:
Q  180 aaaacaatttaacttaattttatattttgctataaaagtagcttatgcataagtgcttattatgataagc 249  Q
    |||||||||||||||  |||||| |||| |||||||| ||||| ||| || || |||||| |||||||||    
T  10619295 aaaacaatttaactttgttttatctttttctataaaaatagctaatgtatgagcgcttatcatgataagc 10619364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 213
Target Start/End: Complemental strand, 41851581 - 41851492
Alignment:
Q  125 gcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttgctata 213  Q
    ||||| |||||||| || ||||||||||||  | ||| || |||||| |||||| |||||||||||||||| ||| ||| |||| |||||    
T  41851581 gcttaatttcataaattctccaagatagcttctgaaaacaacttatagcatatacaaaaacaatttaactttattgtatcttttcctata 41851492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 43570404 - 43570359
Alignment:
Q  180 aaaacaatttaacttaattttatattttgctataaaagtagcttat 225  Q
    ||||||||||||||| |||||||||||| ||||| || ||||||||    
T  43570404 aaaacaatttaacttcattttatattttactatagaattagcttat 43570359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 23974505 - 23974614
Alignment:
Q  114 aagttttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatataaaaaa-caatttaacttaattttatattttgctat 212  Q
    ||||||||| |||| ||||||||||||| || || ||||||    |||  |||||||||| ||||||||| ||||||||||  ||||| | |||| ||||    
T  23974505 aagtttttttggctcattttcataagttctcaaatatagcttaagaaaaaagcttataacgtataaaaaagcaatttaact--attttgtctttttctat 23974602  T
Q  213 aaaagtagctta 224  Q
    |||| |||||||    
T  23974603 aaaaatagctta 23974614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 226
Target Start/End: Original strand, 41812121 - 41812216
Alignment:
Q  131 tttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttgctataaaagtagcttatg 226  Q
    |||| |||||| |||||||||||| || ||| || ||| || |||||| |||||||||||||||| ||||||   ||||| |||||| |||||||||    
T  41812121 tttcctaagttttccaagatagcttttgaaa-catcttgtagcatatacaaaaacaatttaacttcattttaccatttgccataaaaatagcttatg 41812216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 21358 - 21426
Alignment:
Q  180 aaaacaatttaacttaattttatattttgctataaaagtagcttatgcataagtgcttattatgataag 248  Q
    ||||||||||||||| ||||||| |||| |||||||| |||||||| ||||||||||||| ||| ||||    
T  21358 aaaacaatttaactttattttatcttttcctataaaaatagcttatacataagtgcttatcatggtaag 21426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 58927 - 58859
Alignment:
Q  180 aaaacaatttaacttaattttatattttgctataaaagtagcttatgcataagtgcttattatgataag 248  Q
    ||||||||||||||| ||||||  |||| |||||||| |||||||  |||||||||| || ||||||||    
T  58927 aaaacaatttaactttattttaacttttcctataaaaatagcttacacataagtgctgatcatgataag 58859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 226
Target Start/End: Original strand, 24915067 - 24915177
Alignment:
Q  117 ttttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttgctataaa 215  Q
    |||||||  |||||||||| ||||| ||||||| ||||  | ||| ||||||||| |||||| |||||||||||||||| ||||||| || ||||||| |    
T  24915067 ttttttcaacttattttcacaagttctccaagacagcttatgaaaacagcttatagcatatacaaaaacaatttaactttattttatcttctgctataga 24915166  T
Q  216 agtagcttatg 226  Q
    | ||| |||||    
T  24915167 aatagtttatg 24915177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 232
Target Start/End: Complemental strand, 4576870 - 4576744
Alignment:
Q  107 tgtttataagtttt-ttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatat 204  Q
    |||||||||||| | ||| ||||||||||||||||||| ||| ||||||  | ||| ||||||||||| | || ||||| | |||||||| |||| || |    
T  4576870 tgtttataagttgtgttcagcttattttcataagttattcaatatagcttatgaaaacagcttataacttgtacaaaaatattttaactttatttaatct 4576771  T
Q  205 tttgctataaaagtagcttatgcataag 232  Q
    |||| |||||||  ||||||||||||||    
T  4576770 tttgttataaaa-aagcttatgcataag 4576744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 269
Target Start/End: Original strand, 31774120 - 31774223
Alignment:
Q  179 aaaaacaatttaacttaattttatattttgctataaaagtagcttatgc------ataagtgcttattatgataagc-------ctataagctgcaaata 265  Q
    ||||| |||||||| | ||||| ||||||||||||||| ||||||||||      ||||||||||||||||||||||       ||||||||||||||||    
T  31774120 aaaaataatttaacgttattttctattttgctataaaaatagcttatgcttataaataagtgcttattatgataagcacttatactataagctgcaaata 31774219  T
Q  266 agtt 269  Q
    ||||    
T  31774220 agtt 31774223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 38503465 - 38503519
Alignment:
Q  102 gacattgtttataagtt-ttttcggcttattttcataagttatccaagatagcta 155  Q
    ||||||||| ||||||| ||||| ||||||||||||||||| |||||||||||||    
T  38503465 gacattgttcataagttgttttcagcttattttcataagttctccaagatagcta 38503519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 226
Target Start/End: Complemental strand, 47432149 - 47432040
Alignment:
Q  117 ttttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttgctataaa 215  Q
    ||||||| |||||||||||||| || | ||| ||| || | |||| || |||||| |||||  |||||||||||||||| ||||||| |||| |||||||    
T  47432149 ttttttcagcttattttcataaattcttcaatataact-tataaaacaccttatagcatattcaaaaacaatttaactttattttatctttttctataaa 47432051  T
Q  216 agtagcttatg 226  Q
    | |||||||||    
T  47432050 aatagcttatg 47432040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 213
Target Start/End: Original strand, 15687346 - 15687461
Alignment:
Q  102 gacattgtttataagtt-ttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatataaa---aaacaatttaacttaat 197  Q
    ||||||| ||||||||| ||||| ||| ||||| ||||||| |||||||||| ||  |||| ||||||||| | |||| |   ||||||||||||||||     
T  15687346 gacattgcttataagttattttcagctcatttttataagttctccaagatagttaactaaaacagcttatatcttatacacgaaaacaatttaacttaac 15687445  T
Q  198 tttatattttgctata 213  Q
    |||||  |||||||||    
T  15687446 tttatcatttgctata 15687461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 27145736 - 27145785
Alignment:
Q  102 gacattgtttataagttttttcggcttattttcataagttatccaagata 151  Q
    ||||||||| |||||||||||| ||||||||||||||||| | |||||||    
T  27145736 gacattgttcataagttttttcagcttattttcataagttcttcaagata 27145785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 225
Target Start/End: Original strand, 27820337 - 27820461
Alignment:
Q  102 gacattgtttataagtt-ttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattt 199  Q
    ||||||||| ||||| | ||||| |||||||||||||| || ||||||||||||  | ||| |||| |||| | |||| | |||||||||| ||| ||||    
T  27820337 gacattgttcataagctattttcagcttattttcataaattctccaagatagcttataaaaacagcatatagcttatacataaacaatttagctttattt 27820436  T
Q  200 tatattttgctataaaagtagcttat 225  Q
    |||| ||| |||||||| ||||||||    
T  27820437 tata-tttactataaaaatagcttat 27820461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 225
Target Start/End: Original strand, 34795442 - 34795550
Alignment:
Q  118 tttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttgctataaaa 216  Q
    |||||||| ||||||||||||||| ||||| ||||||| | ||| |||| |||||| |||| | | |||||| ||||  ||||||| |||| | ||||||    
T  34795442 tttttcggtttattttcataagttctccaatatagctaataaaaacagcatataacgtatacatagacaattaaactctattttatctttttcaataaaa 34795541  T
Q  217 gtagcttat 225  Q
     ||||||||    
T  34795542 atagcttat 34795550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 227
Target Start/End: Original strand, 37517213 - 37517321
Alignment:
Q  120 tttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttgctataaaagt 218  Q
    |||||| |||||||||  |||| || || ||||||  |||||  | ||||||| ||||| |||||||||||||||| ||||||||||||| |||| || |    
T  37517213 tttcggtttattttcaggagttctctaatatagcttattaaaataacttataatatatacaaaaacaatttaactttattttatattttggtatagaaat 37517312  T
Q  219 agcttatgc 227  Q
    | |||||||    
T  37517313 aacttatgc 37517321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 247
Target Start/End: Complemental strand, 51190868 - 51190784
Alignment:
Q  164 agcttataacatata-aaaaacaatttaacttaattttatattttgctataaaagtagcttatgcataagtgcttattatgataa 247  Q
    |||||||||| |||| |||||||||||||||| ||||||| ||||||| || || |||||| |  ||||||| |||| |||||||    
T  51190868 agcttataacttatacaaaaacaatttaactttattttatcttttgctttacaaatagcttttaaataagtgtttatcatgataa 51190784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 2295045 - 2294989
Alignment:
Q  219 agcttatgcataagtgcttattatgataagcctataagctgcaaataagttgtttatcc 277  Q
    ||||||||||||||  ||||| |||||||||  ||||||||||||||||||| ||||||    
T  2295045 agcttatgcataagcacttatcatgataagc--ataagctgcaaataagttgcttatcc 2294989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 244
Target Start/End: Complemental strand, 30581807 - 30581728
Alignment:
Q  166 cttataacatataaaaaa-caatttaacttaattttatattttgctataaaagtagcttatgcataagtgcttattatga 244  Q
    |||||| ||||||||||| ||||||||||| |||| ||  ||| |||||||| ||||||||| |||| ||||||| ||||    
T  30581807 cttatagcatataaaaaaacaatttaactttatttcatcgttttctataaaaatagcttatgtataactgcttatcatga 30581728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 23544720 - 23544786
Alignment:
Q  180 aaaacaatttaacttaattttatattttgctataaaagtagcttatgcataagtgcttattatgata 246  Q
    |||||||||| |||||||||||| |||| | ||| || |||||||| |||||| |||||| ||||||    
T  23544720 aaaacaatttgacttaattttatctttttccatagaaatagcttatacataagcgcttatcatgata 23544786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 226
Target Start/End: Original strand, 37631575 - 37631685
Alignment:
Q  117 ttttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaacttaattttatattttgctataaa 215  Q
    ||||||| ||||||||||||||||| ||||| ||||||    ||| ||||| ||| |||| | |||||||||||| ||| ||||||| |||  |||||||    
T  37631575 ttttttcagcttattttcataagttctccaatatagcttacaaaaacagctaatatcatacacaaaaacaatttagcttcattttatctttctctataaa 37631674  T
Q  216 agtagcttatg 226  Q
      |||||||||    
T  37631675 gatagcttatg 37631685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 192
Target Start/End: Original strand, 3234031 - 3234107
Alignment:
Q  117 ttttttcggcttattttcataagttatccaagatagctatttaaatcagcttataacatata-aaaaacaatttaac 192  Q
    |||||||  |||||||||||||||| ||||| ||||||  | ||| || |||||| |||||| ||||||||||||||    
T  3234031 ttttttctacttattttcataagttctccaatatagcttataaaaacaacttatagcatatacaaaaacaatttaac 3234107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 7137016 - 7137068
Alignment:
Q  119 ttttcggcttattttcataagttatccaagatagctatttaaatcagcttata 171  Q
    ||||| ||||||||||||||||| ||||||||||||  | ||| |||||||||    
T  7137016 ttttcagcttattttcataagttctccaagatagcttatgaaaacagcttata 7137068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 45145217 - 45145165
Alignment:
Q  179 aaaaacaatttaacttaattttatattttgctataaaagtagcttatgcataa 231  Q
    |||||||||||||  | ||||||| ||||||||||||| |||||||| |||||    
T  45145217 aaaaacaatttaatattattttatcttttgctataaaaatagcttatacataa 45145165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 51558 - 51508
Alignment:
Q  180 aaaacaatttaacttaattttatattttgctataaaagtagcttatgcata 230  Q
    ||||||||||||||| ||||||||||||| ||||||| || ||||| ||||    
T  51558 aaaacaatttaactttattttatattttgttataaaaataacttatacata 51508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University