View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_low_106 (Length: 285)
Name: NF1149_low_106
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_106 |
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Alignment Details
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 58 - 235
Target Start/End: Original strand, 8532270 - 8532446
Alignment:
| Q |
58 |
atgaaaactccatcaacatcacatttcaaaacactatctacatgtagggaaacccccctaattttaaaggactaaaattatgttttgnnnnnnncttctt |
157 |
Q |
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| T |
8532270 |
atgataactccatcacaattacatttcaaaactctatctacatgtaggaaaccctccctaattttaaaggagtaaaattatgtttt-tcttcttcttctt |
8532368 |
T |
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| Q |
158 |
tcgatttcaagtgttagatggcctaaattaagtattattctactaaatttggttaaatttaagaaatagtgaaatgaa |
235 |
Q |
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| T |
8532369 |
tcgatttcaagtgttagatggcctaaattatgtattattctactaaatttggttaaattttagaaatagtgaaatgaa |
8532446 |
T |
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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 118
Target Start/End: Original strand, 8526943 - 8527013
Alignment:
| Q |
48 |
aggggtcagtatgaaaactccatcaacatcacatttcaaaacactatctacatgtagggaaacccccctaa |
118 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
8526943 |
aggggtcagtatgaaaactccatcaacattacatttcaaaacactatctacatgtaggaaaacccccctaa |
8527013 |
T |
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