View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1149_low_11 (Length: 642)
Name: NF1149_low_11
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 74 - 551
Target Start/End: Complemental strand, 19419832 - 19419363
Alignment:
| Q |
74 |
aagaatatcccaagaatgtgtagtgtggagcttactcattttgctctcaaaaacagacacaactgaatcatattctgaaacataatccaaaacattgatc |
173 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19419832 |
aagaaaatcccaagaatgtgtagtgtggagcttactcattttgctctcaaaaacagacacaactgaatcatattctgaaacataatccaaaacattgatc |
19419733 |
T |
|
| Q |
174 |
agaagattctttcagataaagtaagaagatagaaattagaaagatataatgctggagtacaatacctgcaagtttattagcttgctctggcgtaatcata |
273 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
19419732 |
agaa-----------ataaagtaagaagatagaaattagaaagatataatgctggagtacaatgcctgcaagtttattagcttgctccaacgtaatcata |
19419644 |
T |
|
| Q |
274 |
gccgaaaagcctcgaaagcttttactataatggtgtagtgctgaagtctttgcatcatcgagactgaaatgttaaaagtattaattaatatttgatagag |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19419643 |
gccgaaaagcctcgaaagcttttactataatggtgtagtgctgaagtctttgcatcatcgagactgaaatgttaaaagtattaattaatatttgatagag |
19419544 |
T |
|
| Q |
374 |
catgtttattttagcctaaattactctatttcaaaatgttcacattcacacacat---tatgaagcttaaaagaacacgtagttatttgtcataccttcc |
470 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19419543 |
catgtttattttagcctaaattactctatttcaaaatgttcacattcacacacataaatttgaagcttaaaagaacacatagttatttgtcataccttcc |
19419444 |
T |
|
| Q |
471 |
agtgactgaagctagtatctcatggtttgctctgatgacagactctgaattggggtgtgaatgatctcccatgtaaattat |
551 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19419443 |
agtgactgaagctagtatctcatggtttgctctgacgacagactctgaattggggtgtgaatgatctcccatgtaaattat |
19419363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 74 - 448
Target Start/End: Complemental strand, 19426538 - 19426178
Alignment:
| Q |
74 |
aagaatatcccaagaatgtgtagtgtggagcttactcattttgctctcaaaaacagacacaactgaatcatattctgaaacataatccaaaacattgatc |
173 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19426538 |
aagaaaatcccaagaatgtgtagtgtggagcttacttattttgctctcaaaaacagacacaactgaatcatattctgaaacataatccaaaacattgatc |
19426439 |
T |
|
| Q |
174 |
agaagattctttcagataaagtaagaagatagaaattagaaagatataatgctggagtacaatacctgcaagtttattagcttgctctggcgtaatcata |
273 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||| |||| || | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19426438 |
agaagattctttcaaataaagtaa---------------aaagatataatattggaatatagtacctgcaagtttattagcttgctctggcgtaatcata |
19426354 |
T |
|
| Q |
274 |
gccgaaaagcctcgaaagcttttactataatggtgtagtgctgaagtctttgcatcatcgagactgaaatgttaaaagtattaattaatatttgatagag |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||| |
|
|
| T |
19426353 |
gccgaaaagcctcgaaagcttttactataatggtgtagtgctgaagtctttgcatcatcgagactgaaatgtt-agagaattaattaatatttgatagag |
19426255 |
T |
|
| Q |
374 |
catgtttattttagcctaaattactctatttcaaaatgttcacattcacacacat---tatgaagcttaaaagaacac |
448 |
Q |
| |
|
|| ||||||||||||||||||||||| |||| |||||||||| |||||||||| ||| |||||||||||||||| |
|
|
| T |
19426254 |
caagtttattttagcctaaattactccattt-tgaatgttcacactcacacacataaatatcaagcttaaaagaacac |
19426178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 457 - 551
Target Start/End: Complemental strand, 19426136 - 19426042
Alignment:
| Q |
457 |
ttgtcataccttccagtgactgaagctagtatctcatggtttgctctgatgacagactctgaattggggtgtgaatgatctcccatgtaaattat |
551 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||| |
|
|
| T |
19426136 |
ttgtcatgccttccagtaactgaagctagtatctcatggtttgctctgatgacagactcggaatcggggtgcgaatgatctcccatgtaaattat |
19426042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University