View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1149_low_112 (Length: 268)

Name: NF1149_low_112
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1149_low_112
NF1149_low_112
[»] chr6 (11 HSPs)
chr6 (30-257)||(6497695-6497922)
chr6 (30-257)||(6460750-6460977)
chr6 (107-255)||(6519576-6519724)
chr6 (107-255)||(6529223-6529371)
chr6 (102-257)||(6506508-6506663)
chr6 (102-255)||(6472041-6472194)
chr6 (102-255)||(6466357-6466510)
chr6 (101-257)||(6515089-6515245)
chr6 (146-234)||(7204154-7204242)
chr6 (146-234)||(7238905-7238993)
chr6 (149-231)||(6458424-6458506)
[»] chr7 (3 HSPs)
chr7 (113-255)||(9664312-9664454)
chr7 (102-231)||(3752829-3752958)
chr7 (149-257)||(4047254-4047362)
[»] chr4 (1 HSPs)
chr4 (113-255)||(13535336-13535478)


Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 30 - 257
Target Start/End: Complemental strand, 6497922 - 6497695
Alignment:
Q  30 aaaaatagatatttactatcaacaacaaaatgagctctccttttccaatgacagatccaagttcaactattatcccagacccctccaaattcttctctaa 129  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6497922 aaaaatagagatttactatcaacaacaaaatgagctctccttttccaatgacagattcaagttcaactattatcccagacccctccaaattcttctctaa 6497823  T
Q  130 aaatctgctatctaaacccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacctgaatattttcatccttacctcatcaaa 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6497822 aaatctgctatctaaacccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacctgaatattttcatccttacctcatcaaa 6497723  T
Q  230 tcatcagactcatcactttctgtttcat 257  Q
    ||||||||||||||||||||||||||||    
T  6497722 tcatcagactcatcactttctgtttcat 6497695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 30 - 257
Target Start/End: Original strand, 6460750 - 6460977
Alignment:
Q  30 aaaaatagatatttactatcaacaacaaaatgagctctccttttccaatgacagatccaagttcaactattatcccagacccctccaaattcttctctaa 129  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |  |||| |||||||||||||||||||||      
T  6460750 aaaaatagagatttactatcaacaacaaaatgagctctccttttccaatgatagatccaagttccactgtcctccctgacccctccaaattcttctcttc 6460849  T
Q  130 aaatctgctatctaaacccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacctgaatattttcatccttacctcatcaaa 229  Q
    |||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||| |||| ||||||||||| ||||| ||||||||||||||||||| |    
T  6460850 aaatctgctatccaaaccactccctacaaactccttcttccaaaactttgttctcgacaatggtgaccaaccggaatactttcatccttacctcatcaga 6460949  T
Q  230 tcatcagactcatcactttctgtttcat 257  Q
    || ||  ||||||| |||||||| ||||    
T  6460950 tcttccaactcatctctttctgtctcat 6460977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 107 - 255
Target Start/End: Original strand, 6519576 - 6519724
Alignment:
Q  107 gacccctccaaattcttctctaaaaatctgctatctaaacccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacctgaat 206  Q
    |||||||||||||||||||||  |||| | ||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6519576 gacccctccaaattcttctctccaaatttactatccaaacccctccctacaaactctttcttccaaaactttgttctcaaaaacggtgaccaacctgaat 6519675  T
Q  207 attttcatccttacctcatcaaatcatcagactcatcactttctgtttc 255  Q
    || ||||||| |||||||| ||||||||| |||||||||||||||||||    
T  6519676 atattcatccatacctcattaaatcatcaaactcatcactttctgtttc 6519724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 107 - 255
Target Start/End: Complemental strand, 6529371 - 6529223
Alignment:
Q  107 gacccctccaaattcttctctaaaaatctgctatctaaacccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacctgaat 206  Q
    |||||||||||||||||||||  |||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6529371 gacccctccaaattcttctctccaaatctgctatccacacccctccctacaaactctttcttccaaaactttgttctcaacaatggtgaccaacctgaat 6529272  T
Q  207 attttcatccttacctcatcaaatcatcagactcatcactttctgtttc 255  Q
    |  ||||||| || ||||||||||| |||||||||||||||||| ||||    
T  6529271 acattcatccatatctcatcaaatcttcagactcatcactttctatttc 6529223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 102 - 257
Target Start/End: Complemental strand, 6506663 - 6506508
Alignment:
Q  102 tcccagacccctccaaattcttctctaaaaatctgctatctaaacccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacc 201  Q
    |||| |||||||||||||||||||||  |||||||||||| | |||||| || ||||||||||||||||||||||||||||||||||| |||||   |||    
T  6506663 tccctgacccctccaaattcttctctccaaatctgctatccacacccctgcctacaaactctttcttccaaaactttgttctcaacaatggtgatgcacc 6506564  T
Q  202 tgaatattttcatccttacctcatcaaatcatcagactcatcactttctgtttcat 257  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  6506563 tgaatactttcatccttacctcatcaaatcatcaaactcatcactttctgtctcat 6506508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 102 - 255
Target Start/End: Original strand, 6472041 - 6472194
Alignment:
Q  102 tcccagacccctccaaattcttctctaaaaatctgctatctaaacccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacc 201  Q
    |||| ||||||||||||||||||||   |||| ||||||| | ||||||||| ||||||||||||||||||||| |||| || || || |||||||||||    
T  6472041 tccctgacccctccaaattcttctcaccaaatttgctatccacacccctccctacaaactctttcttccaaaacattgtcctaaaaaatggtgaccaacc 6472140  T
Q  202 tgaatattttcatccttacctcatcaaatcatcagactcatcactttctgtttc 255  Q
    ||||||  |||||||||||||||||||||||||| |||||||||||||||||||    
T  6472141 tgaatacattcatccttacctcatcaaatcatcaaactcatcactttctgtttc 6472194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 102 - 255
Target Start/End: Complemental strand, 6466510 - 6466357
Alignment:
Q  102 tcccagacccctccaaattcttctctaaaaatctgctatctaaacccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacc 201  Q
    |||| |||||| | || |||||||||  |||||||||||| | |||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  6466510 tccctgaccccacaaacttcttctctccaaatctgctatccacacccctccccacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacc 6466411  T
Q  202 tgaatattttcatccttacctcatcaaatcatcagactcatcactttctgtttc 255  Q
    ||||||  ||||||| || ||||||||||| ||| |||||||||||||| ||||    
T  6466410 tgaatacattcatccatatctcatcaaatcttcaaactcatcactttctctttc 6466357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 101 - 257
Target Start/End: Original strand, 6515089 - 6515245
Alignment:
Q  101 atcccagacccctccaaattcttctctaaaaatctgctatctaaacccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaac 200  Q
    ||||| || |||||||| ||||||||   |||||| ||||||| ||||||||||||||||||||||||||||||||||  |||||   | |||||   ||    
T  6515089 atccctgatccctccaagttcttctccccaaatcttctatctacacccctccccacaaactctttcttccaaaacttttctctcagagagggtgaaacac 6515188  T
Q  201 ctgaatattttcatccttacctcatcaaatcatcagactcatcactttctgtttcat 257  Q
    |||||||  | |||||||||||||||| |||| || |||||||||||||| ||||||    
T  6515189 ctgaatacatccatccttacctcatcagatcaacaaactcatcactttctttttcat 6515245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 234
Target Start/End: Original strand, 7204154 - 7204242
Alignment:
Q  146 cccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacctgaatattttcatccttacctcatcaaatcatc 234  Q
    ||||||||||| |  ||||||||||||||||||||||||| ||| |||||||||||||||||  ||||||| |||||||| ||||||||    
T  7204154 cccctccccactatttctttcttccaaaactttgttctcatcaatggtgaccaacctgaatacattcatccctacctcattaaatcatc 7204242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 234
Target Start/End: Original strand, 7238905 - 7238993
Alignment:
Q  146 cccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacctgaatattttcatccttacctcatcaaatcatc 234  Q
    ||||||||||| |  ||||||||||||||||||||||||| ||| |||||||||||||||||  ||||||| |||||||| ||||||||    
T  7238905 cccctccccactatttctttcttccaaaactttgttctcatcaatggtgaccaacctgaatacattcatccctacctcattaaatcatc 7238993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 231
Target Start/End: Complemental strand, 6458506 - 6458424
Alignment:
Q  149 ctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacctgaatattttcatccttacctcatcaaatc 231  Q
    ||||| |||||||||||||||||||| ||||||||  | || ||||||  |||||| ||  |||| |||||||||||||||||    
T  6458506 ctcccaacaaactctttcttccaaaattttgttctacaaaatggtgacacacctgagtacattcacccttacctcatcaaatc 6458424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 113 - 255
Target Start/End: Original strand, 9664312 - 9664454
Alignment:
Q  113 tccaaattcttctctaaaaatctgctatctaaacccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacctgaatattttc 212  Q
    ||||| |||||||||  |||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| || |||||||||  ||||||  |||    
T  9664312 tccaatttcttctctccaaatcttctatctacacccctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaatatgaatacattc 9664411  T
Q  213 atccttacctcatcaaatcatcagactcatcactttctgtttc 255  Q
    | ||||| ||| ||||||| ||  |||||||||||||| ||||    
T  9664412 acccttatctcgtcaaatcgtcgaactcatcactttctctttc 9664454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 231
Target Start/End: Original strand, 3752829 - 3752958
Alignment:
Q  102 tcccagacccctccaaattcttctctaaaaatctgctatctaaacccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacc 201  Q
    ||||| |||| || || ||||||||  |||| || ||||| | ||||||||| |||||||||||||||||||||||||||||| |||| ||||||  |||    
T  3752829 tcccaaacccttcaaacttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacc 3752928  T
Q  202 tgaatattttcatccttacctcatcaaatc 231  Q
    ||||||  |||| |||||||||||||||||    
T  3752929 tgaatacattcacccttacctcatcaaatc 3752958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 257
Target Start/End: Complemental strand, 4047362 - 4047254
Alignment:
Q  149 ctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacctgaatattttcatccttacctcatcaaatcatcagactcatcacttt 248  Q
    ||||| |||||||| ||||||||||| ||||||||  | || ||||| |||| ||||||  |||| ||||||||  ||||||| ||| |||| || || |    
T  4047362 ctccctacaaactcattcttccaaaattttgttctacaaaatggtgatcaacatgaatacattcacccttaccttgtcaaatcctcaaactcttccctat 4047263  T
Q  249 ctgtttcat 257  Q
    |||||||||    
T  4047262 ctgtttcat 4047254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 113 - 255
Target Start/End: Original strand, 13535336 - 13535478
Alignment:
Q  113 tccaaattcttctctaaaaatctgctatctaaacccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacctgaatattttc 212  Q
    ||||| |||||||||  |||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| || |||||||||  ||||||  |||    
T  13535336 tccaatttcttctctccaaatcttctatctacacccctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaatatgaatacattc 13535435  T
Q  213 atccttacctcatcaaatcatcagactcatcactttctgtttc 255  Q
    | ||||| ||| ||||||| ||  |||||||||||||| ||||    
T  13535436 acccttatctcgtcaaatcgtcgaactcatcactttctctttc 13535478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University