View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_low_115 (Length: 260)
Name: NF1149_low_115
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_115 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 30 - 260
Target Start/End: Original strand, 39812331 - 39812561
Alignment:
| Q |
30 |
acatggactgccaatggtggccactaaaaatggtggaccggttgacattaatcgggtaattgaaaaattaactttatatatatcatactgagttaaaata |
129 |
Q |
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| T |
39812331 |
acatggactgccaatggtggccactaaaaatggtggaccggttgacattaatcgggtaattgaaaaattaactttatatatatcatactgagttaaaata |
39812430 |
T |
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| Q |
130 |
tgcatactaggaagttcctatattttacaatatgtactattttcttagttgtaatcaagacattggaaaaataaatgacgttgtgattctttgttataat |
229 |
Q |
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| T |
39812431 |
tgcatactaggaagttcctatattttacaacatgtactattttcttagttgtaatcaagacattggaaaaataaatgacgttgtgattctttgttataat |
39812530 |
T |
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| Q |
230 |
gttaggccctcaacaatggtttgcttgtgga |
260 |
Q |
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| T |
39812531 |
gttaggccctcaacaatggtttgcttgtgga |
39812561 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 15799913 - 15799971
Alignment:
| Q |
30 |
acatggactgccaatggtggccactaaaaatggtggaccggttgacattaatcgggtaa |
88 |
Q |
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| T |
15799913 |
acatggccttccaatggtggccactaaaaatggtggacctgtcgacattcatcgggtaa |
15799971 |
T |
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