View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_low_119 (Length: 252)
Name: NF1149_low_119
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_119 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 36262186 - 36261965
Alignment:
| Q |
1 |
ccggatctcttgaagcagatatttttaaatctgttattataagacttttcaataaaggtttcagaattccacaagctcaaatcaaacatgaaaactattg |
100 |
Q |
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| T |
36262186 |
ccggatctcttgaagcagatatttttaaatctgttattataagacttttcaataaaggtttcagaattccacaagctcaaatcaaacatgaaaactattg |
36262087 |
T |
|
| Q |
101 |
ttagcacaaacaacacatcattgcttatttgcatattctaacatattactcatcatattccgttactttttcactcattcctttcccttctctttcttac |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36262086 |
ttagcaca---aacacatcattgcttatttgcatattctaacatattactcatcatattccgtta---------------ctttcccttctctttcttac |
36262005 |
T |
|
| Q |
201 |
atatctcactaaccaaaacaatatttatcccagcaacagc |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
36262004 |
atatctcactaaccaaaacaatatttatcccagcaacagc |
36261965 |
T |
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