View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_low_12 (Length: 629)
Name: NF1149_low_12
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 98 - 615
Target Start/End: Complemental strand, 260752 - 260243
Alignment:
| Q |
98 |
acactccctgcaacaggtatcaccttttttcgcttttctcccaatcnnnnnnnnnnnnnnnnnnnnttaggctgcctataggataaaaatatgttcttgg |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||| |
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| T |
260752 |
acactccctgcaacaggtatcaccttttttcgcttttctcccaatcttattattatt---------ttaggctgcctgtaggatagaaatatgttcttgg |
260662 |
T |
|
| Q |
198 |
agttctaacctctcaaatttatgctaaattgatgtgatcct-aacatgtttacccttcacaagaattattattcaatcatgcaataaaaacaaccaaatt |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
260661 |
agttctaacctctcaaatttatgctaaattgatgtgatccttaacatgtttacccttcacaagaattattattcaatcatgcaataaaaacaaccaaatt |
260562 |
T |
|
| Q |
297 |
tatctgtgttatttcggtattagatgatgtcgctgtcttgttttaacagctctttcattccattgaggtaatctttgatttgatagaaaacttagagaat |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
260561 |
tatctgtgttatttcggtattagatgatgtcgctgtcttgttttaacagctctttcattccattgaggtaatctttgatttgatagaaaacttagagaat |
260462 |
T |
|
| Q |
397 |
tgtctaaagttcnnnnnnnatgttcaagagcaacttatgcttctttcatagtgtaagatgggttgaaagttgatgagtggatttgagttttcattttgtt |
496 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
260461 |
tgtctaaagttctttttttatgttcaagagcaacttatgcttctttcgtagtgtaagatgggttgaaagttgatgagtggatttgagttttcattttgtt |
260362 |
T |
|
| Q |
497 |
catttaaatgggctgtaacatatattcaaatacattgaagaaaggactagagcattgaagtaaggagataaggctttatgaggaagaatgacattcacgg |
596 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
260361 |
catttaaatgggctgcaacatatattcaaatacattgaagaaaggactagagcattgaagtaaggagataaggctttatgaggaagaatgacattcacag |
260262 |
T |
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| Q |
597 |
actggttacactttagaga |
615 |
Q |
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||||||||||||||||||| |
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| T |
260261 |
actggttacactttagaga |
260243 |
T |
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