View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_low_120 (Length: 251)
Name: NF1149_low_120
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_120 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 40181055 - 40180848
Alignment:
| Q |
14 |
ataggtaccaaattaaatcagctatcaaattcatggactttgccactcctcgtcaccatcaacaacattttttactcaaaattattaaaacctcttgtca |
113 |
Q |
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| T |
40181055 |
ataggtacaaaattaaatcagctattgaattcatggactttgccactcctcgtcaccatcaacaacattttttactcaaagttattaaaacctcttgtca |
40180956 |
T |
|
| Q |
114 |
aactaaatttgttgaaacaccacctcataatcttatccgctttgtagagttggtttggaagaataataagaatctcatcactacccctgttctggaatcc |
213 |
Q |
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| T |
40180955 |
aactaaatttgttgaaacaccaccttataatcttatccactttgtagaattggtttggaagaataataagaatctcatcactacccctgttctggaatcc |
40180856 |
T |
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| Q |
214 |
cttgtatt |
221 |
Q |
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|||||||| |
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| T |
40180855 |
cttgtatt |
40180848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 38605462 - 38605414
Alignment:
| Q |
70 |
catcaacaacattttttactcaaaattattaaaacctcttgtcaaacta |
118 |
Q |
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| T |
38605462 |
catcaaccacattttctactcaaaattattgaaacctcctgtcaaacta |
38605414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 70 - 218
Target Start/End: Original strand, 46358821 - 46358978
Alignment:
| Q |
70 |
catcaacaacattttttactcaaaattattaaaacctcttgtcaaactaaatttgttgaaacacca---------cctcataatcttatccgctttgtag |
160 |
Q |
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| T |
46358821 |
catcaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataa |
46358920 |
T |
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| Q |
161 |
agttggtttggaagaataataagaatctcatcactacccctgttctggaatcccttgt |
218 |
Q |
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| T |
46358921 |
agttggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgt |
46358978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 73 - 218
Target Start/End: Original strand, 44459253 - 44459407
Alignment:
| Q |
73 |
caacaacattttttactcaaaattattaaaacctcttgtcaaactaaatttgttgaaacacca---------cctcataatcttatccgctttgtagagt |
163 |
Q |
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|||||||| ||| ||| ||| ||||| ||||||||||||||||||||||||||||| | ||| ||||||||||||||| |||| || ||| |
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| T |
44459253 |
caacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagt |
44459352 |
T |
|
| Q |
164 |
tggtttggaagaataataagaatctcatcactacccctgttctggaatcccttgt |
218 |
Q |
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| T |
44459353 |
tggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgt |
44459407 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 73 - 218
Target Start/End: Original strand, 44466786 - 44466940
Alignment:
| Q |
73 |
caacaacattttttactcaaaattattaaaacctcttgtcaaactaaatttgttgaaacacca---------cctcataatcttatccgctttgtagagt |
163 |
Q |
| |
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|||||||| ||| ||| ||| ||||| ||||||||||||||||||||||||||||| | ||| ||||||||||||||| |||| || ||| |
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| T |
44466786 |
caacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagt |
44466885 |
T |
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| Q |
164 |
tggtttggaagaataataagaatctcatcactacccctgttctggaatcccttgt |
218 |
Q |
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|||||||||||||||| ||| | |||||||||||||||||||||||||||||||| |
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| T |
44466886 |
tggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgt |
44466940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 218
Target Start/End: Original strand, 44460076 - 44460109
Alignment:
| Q |
185 |
atctcatcactacccctgttctggaatcccttgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
44460076 |
atctcatcactacccctgttctggaatcccttgt |
44460109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 218
Target Start/End: Original strand, 44467609 - 44467642
Alignment:
| Q |
185 |
atctcatcactacccctgttctggaatcccttgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
44467609 |
atctcatcactacccctgttctggaatcccttgt |
44467642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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