View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_low_13 (Length: 627)
Name: NF1149_low_13
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 91 - 614
Target Start/End: Complemental strand, 36262769 - 36262246
Alignment:
| Q |
91 |
aaactttgtaactttggattagcaagagtggtagatgattacgattttggtgaagaggggttccaatttacaaggcatgttgttggcactcatggttaca |
190 |
Q |
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| T |
36262769 |
aaactttgtaactttggattagcaagagtggtagatgattacgattttggtgaagaggggttccaatttacaaggcatgttgttggcactcatggttaca |
36262670 |
T |
|
| Q |
191 |
tgccacctgagtatatcgagaacggtttggttagtccaaagatggatgtttttgcttttggtgttgtgatgttggagcttctttcaggaagagaagcaat |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36262669 |
tgccacctgagtatatcgagaacggtttggttagtccaaagatggatgtttttgcttttggtgttgtgatgttggagcttctttcgggaagagaagcaat |
36262570 |
T |
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| Q |
291 |
tgttggtgacaaaaatggaggagagaagcggctatcagctgtcgtgagtgaagtacttgaaggcgataatgtgagggagaaatttcatgctttcatggat |
390 |
Q |
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| T |
36262569 |
tgttggtgacaaaaatggaggagagaagcggctatcagctgtcgtgagtgaagtacttgaaggcgataatgtgagggagaaacttcatgctttcatggat |
36262470 |
T |
|
| Q |
391 |
ccaactttgaggggtgaatacccattgaatatggcatattccatggcagagattgccaaacgctgtgttgccaatgaccacaatttgcgtccaaacgttt |
490 |
Q |
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| T |
36262469 |
ccaactttgaggggtgaatacccattgaatatgggatattccatggcagagattgccaaacgctgtgttgccaattaccacaatttgcgtccaaacgttt |
36262370 |
T |
|
| Q |
491 |
ctgaagttttggttatactgtctaagattcaatcctcttcagtaaatcgggatccatctgatgtgatggagaaaacctttgaccaaatttcagattggaa |
590 |
Q |
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| T |
36262369 |
ctgaagttttggttatactgtctaagattcaatcctcttcagtaaatcgggatccatctgatgtgatggagaaaacttttgaccaaatttcagattggaa |
36262270 |
T |
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| Q |
591 |
aatataataacaaagactccagta |
614 |
Q |
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| T |
36262269 |
aatataataacaaagactccagta |
36262246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 184 - 286
Target Start/End: Original strand, 37062404 - 37062506
Alignment:
| Q |
184 |
ggttacatgccacctgagtatatcgagaacggtttggttagtccaaagatggatgtttttgcttttggtgttgtgatgttggagcttctttcaggaagag |
283 |
Q |
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||||||||| |||| |||||||||||||| |||||| ||| ||||||||||||||||||||| |||||||||||||| |||||||||||||| || |||| |
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| T |
37062404 |
ggttacatggcaccggagtatatcgagaatggtttgattactccaaagatggatgtttttgcatttggtgttgtgattttggagcttctttctggtagag |
37062503 |
T |
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| Q |
284 |
aag |
286 |
Q |
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||| |
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| T |
37062504 |
aag |
37062506 |
T |
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