View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_low_16 (Length: 585)
Name: NF1149_low_16
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 526; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 29 - 578
Target Start/End: Original strand, 18057416 - 18057965
Alignment:
| Q |
29 |
atgttgtatctaagaagatcaagaacatgttcaactttgtacttgtaagatgtttgacatttaggggtttttctcgactcgggtttaagcaaaccgtaga |
128 |
Q |
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| T |
18057416 |
atgttgtatctaagaagatcaagaacatgttcaactttatacttgtaagatgtttgacatttaggggtttttctcgactcgggtttaagcaaaccgtaga |
18057515 |
T |
|
| Q |
129 |
agaatttgaaggcaagagtgttgaaactcatttgtggtttaggactattggtcatgttattggttaaatcaaacaattttgttaaaacaaacattggaag |
228 |
Q |
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| T |
18057516 |
agaatttgaaggaaagagtgttgaaactcatttgtggtttaggactattggtcatgttattggttaattcaaacaattttgttaaaacaaacattggaag |
18057615 |
T |
|
| Q |
229 |
ttggttttcgagcattatcaactcgcgacgaatggttggtaacatccatctactaagagaaggaacatgtttgaatttgttgtctgataaatccctcaag |
328 |
Q |
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| T |
18057616 |
ttggttttcgagcattatcaactcgcgacgaatggttggtaacatccatctactaagagaaggaacatgtttgaatttgttgtctgataaatctctcaag |
18057715 |
T |
|
| Q |
329 |
agttgaatgatgaaagaaccatcaactaacatcatctttagaaactcatcactgctcaatttgatttcacccatgtaacatcttctagcattgatttctt |
428 |
Q |
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| T |
18057716 |
agttgaatgatgaaagaaccatcaactaacatcatctttagaaactcatcactgcttaatttgatttcacccatgtaacatcttctagcattgatctctt |
18057815 |
T |
|
| Q |
429 |
ctttctcaagaaacttccaagcatcttctaatttggctccatttgcaccttttttatcaaagagacgctgaaagaacttgtttttgagaatttccatttc |
528 |
Q |
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| T |
18057816 |
ctttctcaagaaacttccaagcatcttctaatttggctccatttgcaccttttttatcaaagagacgctgaaagaacttgtttttgagaatttccatttc |
18057915 |
T |
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| Q |
529 |
ttgtaggtgttgtgatccataatggtaaggacctattgagatattgttgg |
578 |
Q |
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| T |
18057916 |
ttgtaggtgttgtgatccataatggtaaggacctattgagatattgttgg |
18057965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 29 - 570
Target Start/End: Original strand, 15734029 - 15734567
Alignment:
| Q |
29 |
atgttgtatctaagaagatcaagaacatgttcaactttgtacttgtaagatgtttgacatttaggggtttttctcgactcgggtttaagcaaaccgtaga |
128 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||| || |||| || |||||| | ||||| |
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| T |
15734029 |
atgttgtatctaagaagatcaagaacatgttcaattttgaacttgtaagatgtttgacattcaggggtttttcgtgattcggattgaagcaatcggtaga |
15734128 |
T |
|
| Q |
129 |
agaatttgaaggcaagagtgttgaaactcatttgtggtttaggactattggtcatgttattggttaaatcaaacaattttgttaaaacaaacattggaag |
228 |
Q |
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| T |
15734129 |
agaatttgaaagaaagattgtagaaactcatttgtggatgaagactattgttt---ttatcggttagctcgaaaagttttgttaaaacaaacattggaag |
15734225 |
T |
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| Q |
229 |
ttggttttcgagcattatcaactcgcgacgaatggttggtaacatccatctactaagagaaggaacatgtttgaatttgttgtctgataaatccctcaag |
328 |
Q |
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| T |
15734226 |
ttggttttcaagcattatcatctcgcgacgaatggttggtaacatccatctactaagagaaggaacatgtttgaattcgttatccgataaatccctcaag |
15734325 |
T |
|
| Q |
329 |
agttgaatgatgaaagaaccatcaactaacatcatctttagaaactcatcactgctcaatttgatttcacccatgtaacatcttctagcattgatttctt |
428 |
Q |
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| T |
15734326 |
agttgaatgatgaaagaaccatcaaccaacatcatctttagaaactcatcactgcttaatttgatttcacccatgtaacagtttcgcgcattgatttctt |
15734425 |
T |
|
| Q |
429 |
ctttctcaagaaacttccaagcatcttctaatttggctccatttgcaccttttttatcaaagagacgctgaaagaacttgtttttgagaatttccatttc |
528 |
Q |
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|||||||||||||||| ||||| ||||||||||||| |||||||||||| ||| ||| |||||||| ||||| ||||||||||| |||| ||||||||| |
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| T |
15734426 |
ctttctcaagaaacttgcaagcctcttctaatttggatccatttgcaccgtttggatcgaagagacggtgaaaaaacttgtttttcagaacttccatttc |
15734525 |
T |
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| Q |
529 |
ttgtaggtgttgtgatccataatggtaaggacctattgagat |
570 |
Q |
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| T |
15734526 |
ttgcaagtgttgtgatccataatggtaaggacctattgagat |
15734567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 29 - 166
Target Start/End: Original strand, 15728010 - 15728147
Alignment:
| Q |
29 |
atgttgtatctaagaagatcaagaacatgttcaactttgtacttgtaagatgtttgacatttaggggtttttctcgactcgggtttaagcaaaccgtaga |
128 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||| || |||| || |||||| ||||| |
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| T |
15728010 |
atgttgtatctaagaagatcaagaacatgttcaattttgaacttgtaagatgtttgacattcaggggtttttcatgattcggattgaagcaattggtaga |
15728109 |
T |
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| Q |
129 |
agaatttgaaggcaagagtgttgaaactcatttgtggt |
166 |
Q |
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||||| |||| | |||| ||| |||||||||||||||| |
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| T |
15728110 |
agaatatgaaagaaagattgtagaaactcatttgtggt |
15728147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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