View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1149_low_17 (Length: 583)

Name: NF1149_low_17
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1149_low_17
NF1149_low_17
[»] scaffold1041 (1 HSPs)
scaffold1041 (275-481)||(821-1027)
[»] chr8 (13 HSPs)
chr8 (277-481)||(25391717-25391921)
chr8 (275-481)||(25617587-25617801)
chr8 (324-481)||(25494810-25494967)
chr8 (23-147)||(25618042-25618166)
chr8 (18-147)||(25358998-25359127)
chr8 (18-128)||(25399050-25399160)
chr8 (7-147)||(25650769-25650907)
chr8 (411-481)||(25678316-25678386)
chr8 (419-481)||(25358685-25358747)
chr8 (160-212)||(25617849-25617900)
chr8 (165-212)||(25391951-25391997)
chr8 (171-212)||(25650504-25650544)
chr8 (275-303)||(25650413-25650441)
[»] scaffold0466 (4 HSPs)
scaffold0466 (333-481)||(7955-8103)
scaffold0466 (7-145)||(6282-6420)
scaffold0466 (275-335)||(7870-7930)
scaffold0466 (156-212)||(7752-7807)


Alignment Details
Target: scaffold1041 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: scaffold1041
Description:

Target: scaffold1041; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 275 - 481
Target Start/End: Original strand, 821 - 1027
Alignment:
Q  275 cacataaactcgacacccttctaaaaaagcataaggctaccaatgtctagaaagtgtgcaatgaaggacacaaggaaagaatagttgcaaaaggctacac 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  821 cacataaactcgacacccttctaaaaaagcataaggctaccaatgtctagaaagtgtgcaatgaaggacacaaggaaagaatagttgcaaaaggctacac 920  T
Q  375 tgaaaagattgattgaaatatagtatttttcgcaagtcgctcatcaaattaccataagaatagtactctcacaagttgaaaaacatgagttgagagctcc 474  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||| ||||||||||||||    
T  921 tgaaaagattgattgaaatatagtatttttcgcaagtcgctcatcaaaataccgtaagaatagtactctcacgagttgaaaaacacgagttgagagctcc 1020  T
Q  475 tcatatg 481  Q
    |||||||    
T  1021 tcatatg 1027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 181; Significance: 2e-97; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 277 - 481
Target Start/End: Complemental strand, 25391921 - 25391717
Alignment:
Q  277 cataaactcgacacccttctaaaaaagcataaggctaccaatgtctagaaagtgtgcaatgaaggacacaaggaaagaatagttgcaaaaggctacactg 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  25391921 cataaactcgacacccttctaaaaaagcataaggctaccaatgtctagaaagtgtgcaatgaaggacacaaggaaagaatagttgcaaaaggctacactt 25391822  T
Q  377 aaaagattgattgaaatatagtatttttcgcaagtcgctcatcaaattaccataagaatagtactctcacaagttgaaaaacatgagttgagagctcctc 476  Q
     ||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25391821 gaaagattgattgaaatatagtatttttcgcaagtctctcatcaaaataccgtaagaatagtactctcacaagttgaaaaacacgagttgagagctcctc 25391722  T
Q  477 atatg 481  Q
    |||||    
T  25391721 atatg 25391717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 275 - 481
Target Start/End: Complemental strand, 25617801 - 25617587
Alignment:
Q  275 cacataaactcgacacccttctaaaaaagcataaggctaccaatgtctagaaagtgtgcaatgaaggacacaaggaaagaatagttgcaaaaggctacac 374  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25617801 cacataaactcgacacccttctaaaaaagcataaggctaccaatttctagaaagtgtgcaatgaaggacacaaggaaagaatagttgcaaaaggctacac 25617702  T
Q  375 -------tgaaaagattgattgaaatatagtatttttcgcaagtcgctcatcaaa-ttaccataagaatagtactctcacaagttgaaaaacatgagttg 466  Q
           |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||    
T  25617701 tgaagtctgaaaagattgattgaaatatagtattttttgcaagtcgctcatcaaatttaccgtaagaatagtactctcacaagttgaaaaacacgagttg 25617602  T
Q  467 agagctcctcatatg 481  Q
    |||||||||||||||    
T  25617601 agagctcctcatatg 25617587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 324 - 481
Target Start/End: Complemental strand, 25494967 - 25494810
Alignment:
Q  324 gaaagtgtgcaatgaaggacacaaggaaagaatagttgcaaaaggctacactgaaaagattgattgaaatatagtatttttcgcaagtcgctcatcaaat 423  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25494967 gaaagtgtgcaatgaaggacacaaggaaagaatagttgcaaaaggctacactgaaaagattgattgaaatttagtatttttcgcaagtcgctcatcaaat 25494868  T
Q  424 taccataagaatagtactctcacaagttgaaaaacatgagttgagagctcctcatatg 481  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  25494867 taccataagaatagtaatctcacaaattgaaaaacatgagttgagagctcctcatatg 25494810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 25618166 - 25618042
Alignment:
Q  23 tgaaaaacaccacaagatgcatagagtggaagaaattctagaatatcacacttgagggtcacatatgttcatattttagacgatatgaaagccaaacttg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25618166 tgaaaaacaccacaagatgcatagagtggaagaaattctagaatatcacacttgagggtcacatatgttcatattttagacgataagaaagccaaacttg 25618067  T
Q  123 acgacaagagatagaaattcaactt 147  Q
    |||||||||| ||||||||||||||    
T  25618066 acgacaagagctagaaattcaactt 25618042  T

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Target: chr8; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 25359127 - 25358998
Alignment:
Q  18 gtgtctgaaaaacaccacaagatgcatagagtggaagaaattctagaatatcacacttgagggtcacatatgttcatattttagacgatatgaaagccaa 117  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25359127 gtgtgtgaaaaacatcacaagatgcatagagtggaagaaattctagaatatcacacttgagggtcacatatgttcatattttagacgataagaaagccaa 25359028  T
Q  118 acttgacgacaagagatagaaattcaactt 147  Q
    ||||||||||||||| ||||||||||||||    
T  25359027 acttgacgacaagagctagaaattcaactt 25358998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 25399160 - 25399050
Alignment:
Q  18 gtgtctgaaaaacaccacaagatgcatagagtggaagaaattctagaatatcacacttgagggtcacatatgttcatattttagacgatatgaaagccaa 117  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25399160 gtgtgtgaaaaacatcacaagatgcatagagtggaagaaattctagaatatcacacttgagggtcacatatgttcatattttagacgataagaaagccaa 25399061  T
Q  118 acttgacgaca 128  Q
    |||||||||||    
T  25399060 acttgacgaca 25399050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 25650907 - 25650769
Alignment:
Q  7 tccaagaatatgtgtctgaaaaacaccacaagatgcatagagtggaagaaattctagaatatcacacttgagggtcacatatgttcatattttagacgat 106  Q
    ||||| |||| |||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  25650907 tccaacaataagtgtgtgaaaaataccgcaagatgcatagagtggaagaaattctagaatatcacacttgagggtcgcatatgttcatattttggacgat 25650808  T
Q  107 atgaaagccaaacttgacgacaagagatagaaattcaactt 147  Q
    | ||||||||||||||||||||  || ||||||||||||||    
T  25650807 aagaaagccaaacttgacgaca--agctagaaattcaactt 25650769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 411 - 481
Target Start/End: Complemental strand, 25678386 - 25678316
Alignment:
Q  411 tcgctcatcaaattaccataagaatagtactctcacaagttgaaaaacatgagttgagagctcctcatatg 481  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25678386 tcgctcatcaaattaccgtaagaatagtactttcacaagttgaaaaacatgagttgagagctcctcatatg 25678316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 419 - 481
Target Start/End: Complemental strand, 25358747 - 25358685
Alignment:
Q  419 caaattaccataagaatagtactctcacaagttgaaaaacatgagttgagagctcctcatatg 481  Q
    |||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25358747 caaaataccgtaagaatagtactctcacaagttgaaaaacacgagttgagagctcctcatatg 25358685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 25617900 - 25617849
Alignment:
Q  160 cattattatgtctctcttcaaattatgcatacacacaacttagaagcagctac 212  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25617900 cattattatgtctctcttcaaattatgcatacaca-aacttagaagcagctac 25617849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 25391997 - 25391951
Alignment:
Q  165 ttatgtctctcttcaaattatgcatacacacaacttagaagcagctac 212  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||    
T  25391997 ttatgtctcttttcaaattatgcatacaca-aacttagaagcagctac 25391951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 25650544 - 25650504
Alignment:
Q  171 ctctcttcaaattatgcatacacacaacttagaagcagctac 212  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  25650544 ctctcttcaaattatgcatacaca-aacttagaagcagctac 25650504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 303
Target Start/End: Complemental strand, 25650441 - 25650413
Alignment:
Q  275 cacataaactcgacacccttctaaaaaag 303  Q
    |||||||||||||||||||||||||||||    
T  25650441 cacataaactcgacacccttctaaaaaag 25650413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 125; Significance: 4e-64; HSPs: 4)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 333 - 481
Target Start/End: Original strand, 7955 - 8103
Alignment:
Q  333 caatgaaggacacaaggaaagaatagttgcaaaaggctacactgaaaagattgattgaaatatagtatttttcgcaagtcgctcatcaaattaccataag 432  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  7955 caatgaaggacacaaggaaagaatagttgcaaaaggctaagctgaaaatattgattgaaatatagtatttttcgcaagtcactcatcaaaataccataag 8054  T
Q  433 aatagtactctcacaagttgaaaaacatgagttgagagctcctcatatg 481  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8055 aatagtactctcacaagttgaaaaacacgagttgagagctcctcatatg 8103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 7 - 145
Target Start/End: Original strand, 6282 - 6420
Alignment:
Q  7 tccaagaatatgtgtctgaaaaacaccacaagatgcatagagtggaagaaattctagaatatcacacttgagggtcacatatgttcatattttagacgat 106  Q
    ||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6282 tccaacaataagtgtgtgaaaaacaccacaagatgcatagagtggaagaaattctagattatcacacttgagggtcacatatgttcatattttagacgat 6381  T
Q  107 atgaaagccaaacttgacgacaagagatagaaattcaac 145  Q
    | |||||||||||||||||||||||| ||||||||||||    
T  6382 aagaaagccaaacttgacgacaagagctagaaattcaac 6420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 275 - 335
Target Start/End: Original strand, 7870 - 7930
Alignment:
Q  275 cacataaactcgacacccttctaaaaaagcataaggctaccaatgtctagaaagtgtgcaa 335  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7870 cacataaactcgacacccttctaaaaaagcctaaggctaccaatgtctagaaagtgtgcaa 7930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 7752 - 7807
Alignment:
Q  156 tccacattattatgtctctcttcaaattatgcatacacacaacttagaagcagctac 212  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7752 tccacattattatgtctctcttcaaattatgcatacaca-aacttagaagcagctac 7807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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