View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_low_20 (Length: 569)
Name: NF1149_low_20
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_20 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 15 - 569
Target Start/End: Complemental strand, 32220291 - 32219738
Alignment:
| Q |
15 |
aacctgtggtatttatatttttcaactctcttgttatttcagtaacatgaataacagnnnnnnncactttcttcttttcttgacacactgtccattataa |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32220291 |
aacctgtggtatttatatttttcaactctcttgttatttcagtaatatgaataacagtttttttcactttcttcttttcttgacacactgtccattataa |
32220192 |
T |
|
| Q |
115 |
tatgcattttcgtgcaaggtattgccaaatatattcttttacttgccgaagttaaacgaggacgtcgannnnnnngcagtaaggaaaagtatgcaatcac |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | || ||||||||| ||||||||||||||| |
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| T |
32220191 |
tatgcattttcgtgcaaggtattgccaaatatattcttttacttgccgaagttaaacgagcacttggatttttt-gcagtaagggaaagtatgcaatcac |
32220093 |
T |
|
| Q |
215 |
acagtcaagtgagctcggctattgaatgaaagatcagaggactaatattttgattttaccaaaccggctttaaaatgtaactcgaaatataagtcttatg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32220092 |
acagtcaagtgagctcggctattgaatgaaagatcagaggactaatattttgattttaccaaaccggctttaaaatgtaactcgaaatataagtcttatg |
32219993 |
T |
|
| Q |
315 |
atcttcatttaacatccgagatcaacaactacatgactatgtgacggtcgagaatccaattcctctaaatagaagcctgttacaggaaaactcgttgttt |
414 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32219992 |
atcttcatttaacatctgagatcaacaactacatgactatgtgacggtcgagaatccaattcctctaaatagaagcctgttacaggaaaactcgttgttt |
32219893 |
T |
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| Q |
415 |
tagaaatctacactcatgtagtnnnnnnncacaaactcgatatagtcaagatatcaatacggttgtaaaatgttttacactgacaacgtatcaaaattaa |
514 |
Q |
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| T |
32219892 |
tagaaatctacactcatgtagtaaaaaaacacaaactcgatatagtcaagatatcaatacggttgtaaaatgttttacactgacaatgtatcaaaattaa |
32219793 |
T |
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| Q |
515 |
actctaagataaacatcattcttgtgccacaatatttctaactctcctttattat |
569 |
Q |
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| T |
32219792 |
actctaagataaacgtcattcttgtgccaaaatatttctaactctcctttattat |
32219738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 35168823 - 35169097
Alignment:
| Q |
19 |
tgtggtatttatatttttcaactctcttgttatttcagtaacatgaataacagnnnnnnncactttcttcttttcttgacacactgtccattataatatg |
118 |
Q |
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|||||||||| |||||||||||||| ||| |||| ||||| ||||||||||| ||||||||| || ||||||||| |||| ||||||||||| |
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| T |
35168823 |
tgtggtatttctatttttcaactct--tgtaattttagtaatatgaataacagtttttttcactttctttttcccttgacacattgtc-attataatatg |
35168919 |
T |
|
| Q |
119 |
cattttcgtgcaaggtattgccaaatatattcttttacttgccgaagttaaacgaggacgtcgannnnnnngcagtaaggaaaagtatgcaatcacacag |
218 |
Q |
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| T |
35168920 |
catttttatgcaaggtgtttccaaatatgttgttttccttttcgaaattaaaagaggacttggatttcct-gcagtaagggaaagtatacaatcacacag |
35169018 |
T |
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| Q |
219 |
tcaagtgagctcggctattgaatgaaagatcagaggactaatattttgattttaccaaaccggctttaaaatgtaactcgaaa |
301 |
Q |
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| T |
35169019 |
tcaagtgagctcggctat---atgaa-gatcggaggactaatatattgattttaccaaaccggctttaaaatgtaactcgaaa |
35169097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 21532878 - 21533153
Alignment:
| Q |
19 |
tgtggtatttatatttttcaactctcttgttatttcagtaacatgaataacagnnnnnnncactttcttcttttcttgacacactgtccattataatatg |
118 |
Q |
| |
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|||||||||| |||||||||||||| ||| |||| ||||| ||||||||||| ||||||||| || ||||||||| |||| ||||||||||| |
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| T |
21532878 |
tgtggtatttctatttttcaactct--tgtaattttagtaatatgaataacagtttttttcactttctttttcccttgacacattgtc-attataatatg |
21532974 |
T |
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| Q |
119 |
cattttcgtgcaaggtattgccaaatatattcttttacttgccgaagttaaacgaggacgtcgannnnnnngcagtaaggaaaagtatgcaatcacacag |
218 |
Q |
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|||||| |||||||| || |||||||| || ||| ||| |||| ||||| |||||| | || ||||||||| ||| ||| ||||||||||| |
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| T |
21532975 |
catttttatgcaaggtgtttccaaatatgttgctttccttttcgaaattaaaagaggacttggatttcct-gcagtaagggaaactatacaatcacacag |
21533073 |
T |
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| Q |
219 |
tcaagtgagctcggctattgaatgaaagatcagaggactaatattttgattttaccaaa-ccggctttaaaatgtaactcgaaa |
301 |
Q |
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| T |
21533074 |
tcaagtgagctcggctat---atg-aagatcggaggactaatatattgattttaccaaatcgggctttaaaatgtaactcgaaa |
21533153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 43312263 - 43311988
Alignment:
| Q |
19 |
tgtggtatttatatttttcaactctcttgttatttcagtaacatgaataacagnnnnnnncactttcttcttttcttgacacactgtccattataatatg |
118 |
Q |
| |
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|||||||||| |||||||||||||| ||| |||| ||||| ||||||||||| ||||||||| || ||||||||| |||| ||||||||||| |
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| T |
43312263 |
tgtggtatttctatttttcaactct--tgtaattttagtaatatgaataacagtttttttcactttctttttcccttgacacattgtc-attataatatg |
43312167 |
T |
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| Q |
119 |
cattttcgtgcaaggtattgccaaatatattcttttacttgccgaagttaaacgaggacgtcgannnnnnngcagtaaggaaaagtatgcaatcacacag |
218 |
Q |
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|||||| |||||||| || |||||||| || ||| ||| |||| ||||| |||||| | || ||||||||| ||| ||| ||||||||||| |
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| T |
43312166 |
catttttatgcaaggtgtttccaaatatgttgctttccttttcgaaattaaaagaggacttggatttcct-gcagtaagggaaactatacaatcacacag |
43312068 |
T |
|
| Q |
219 |
tcaagtgagctcggctattgaatgaaagatcagaggactaatattttgattttaccaaa-ccggctttaaaatgtaactcgaaa |
301 |
Q |
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|||||||||||||||||| ||| |||||| |||||||||||| |||||||||||||| | |||||||||||||||||||||| |
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| T |
43312067 |
tcaagtgagctcggctat---atg-aagatcggaggactaatatattgattttaccaaatcgggctttaaaatgtaactcgaaa |
43311988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 34745067 - 34745342
Alignment:
| Q |
19 |
tgtggtatttatatttttcaactctcttgttatttcagtaacatgaataacagnnnnnnncactttcttcttttcttgacacactgtccattataatatg |
118 |
Q |
| |
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|||||||||| |||||||||||||| ||| |||| ||||| ||||||||||| ||||||||| || ||||||||| |||| ||||||||||| |
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| T |
34745067 |
tgtggtatttctatttttcaactct--tgtaattttagtaatatgaataacagtttttttcactttctttttcccttgacacattgtc-attataatatg |
34745163 |
T |
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| Q |
119 |
cattttcgtgcaaggtattgccaaatatattcttttacttgccgaagttaaacgaggacgtcgannnnnnngcagtaaggaaaagtatgcaatcacacag |
218 |
Q |
| |
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|||||| |||||||| || |||||||| || ||| ||| |||| ||||| |||||| | || ||||||||| ||| ||| ||||||||||| |
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| T |
34745164 |
catttttatgcaaggtgtttccaaatatgttgctttccttttcgaaattaaaagaggacttggatttcct-gcagtaagggaaactatacaatcacacag |
34745262 |
T |
|
| Q |
219 |
tcaagtgagctcggctattgaatgaaagatcagaggactaatattttgattttaccaaa-ccggctttaaaatgtaactcgaaa |
301 |
Q |
| |
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|||||||||||||||||| ||| |||||| |||||||||||| |||||||||||||| | |||||||||||||||||||||| |
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| T |
34745263 |
tcaagtgagctcggctat---atg-aagatcggaggactaatatattgattttaccaaatcgggctttaaaatgtaactcgaaa |
34745342 |
T |
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