View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_low_22 (Length: 533)
Name: NF1149_low_22
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 30 - 509
Target Start/End: Complemental strand, 26433323 - 26432818
Alignment:
| Q |
30 |
cattgaaattttaattaagagctaatcaatcaaataacccaccacc----aaaaaataattaaactgagcaggttaattatgcagatcaaacaattgcaa |
125 |
Q |
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| T |
26433323 |
cattgaaattttaattaggagctaatcaatcaaataacccaccaccccacaaaaaataattaaactgagtaggttaattacgcagatcaaacaattgcaa |
26433224 |
T |
|
| Q |
126 |
tggattggtcgtcacatctgcacattaacaaattataattttaacttgatttagggattcatgtgagacaaactatatcatcaaaagcatgcttttgaat |
225 |
Q |
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| T |
26433223 |
tggattggtcgtcacatctgcacattaacaaattataattttaacttgatttagggattcatgtgagacaaactatatcatcaaaagcatgcttttgaat |
26433124 |
T |
|
| Q |
226 |
tattagactaataggacagatattaggacaaacactgggacggaaggacaataatacgattaatataaatttgattatcataaacataagactggcctct |
325 |
Q |
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| T |
26433123 |
tattagactaataggacagatattaggacaaacactgggacggaacgacaataatacgattattataaatttgattatcataaacataagactggcctct |
26433024 |
T |
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| Q |
326 |
tgcttag--------------------taatattgagttcaatttcgtcaccnnnnnnntattgagtttaataaaatgtggtatatcacccaaaatttaa |
405 |
Q |
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||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26433023 |
tgcttagtgctaccctttcattaataataatattgagttcaatttcgtca-caaaaaaatattgagtttaataaaatgtggtatatcatccaaaatttaa |
26432925 |
T |
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| Q |
406 |
aaaccagctcaagttgttgtcgcatttacaagaatatg---aacatcatttacttgttcgtaaacaaactcaacattaaagtttctataaagagatattc |
502 |
Q |
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|||||||||| |||| |||||||||||||||||||||| ||||| ||| |||||| |||| ||||||||||||| |||||||||||| |||||||| |
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| T |
26432924 |
aaaccagctcgagttattgtcgcatttacaagaatatgaacaacataattcacttgtccgtagacaaactcaacatggaagtttctataacgagatattt |
26432825 |
T |
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| Q |
503 |
acttgtc |
509 |
Q |
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| T |
26432824 |
acttgtc |
26432818 |
T |
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