View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_low_25 (Length: 506)
Name: NF1149_low_25
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 3e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 4 - 190
Target Start/End: Original strand, 31119884 - 31120071
Alignment:
| Q |
4 |
atgtcgaataatatgtccaaattattgagaccacacaaaacttcctccatctaaaagatctaagtgtctattctagttatggtcaaaactgtaataacta |
103 |
Q |
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| T |
31119884 |
atgtcgaatattatgtccaaattattgagaccacgcaaaacttcctccatctaaaagatctaagtgtctattctagttatggtcaaaactgtaataacta |
31119983 |
T |
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| Q |
104 |
ctagtctatctcggtatcatttataaggtattgaatatatggatcgtctttat--tatatccaacatttagtataatcatagttgatat |
190 |
Q |
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| T |
31119984 |
ctagtctatctcaatatca-ttataaggtatcgaatatatggatcgtctttattatatatctaacatttagtttaatcatagttgatat |
31120071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 404 - 457
Target Start/End: Original strand, 31120155 - 31120208
Alignment:
| Q |
404 |
catgtatttatttatgaattaaagttacaaaagtgtttcatggacacctaattt |
457 |
Q |
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| T |
31120155 |
catgtatttgtttatgaattttagttacaaaaatgttttatggacacctaattt |
31120208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 13465410 - 13465371
Alignment:
| Q |
191 |
taatcatattatgaatataacaaaatattattataatgaa |
230 |
Q |
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| T |
13465410 |
taatcatattatgagtataacaaaatattattataatgaa |
13465371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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