View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_low_27 (Length: 502)
Name: NF1149_low_27
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 30 - 313
Target Start/End: Complemental strand, 10494754 - 10494472
Alignment:
| Q |
30 |
gtttgttgtacatgttcagtttgatcaatggttggtgttgagcattcaaaatcatgctttggtctctcgttgtcttgtaacttgtttggttatagtggag |
129 |
Q |
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| T |
10494754 |
gtttgttgtgcatgttcagtttgatcaatggttggtgttgagcattcaaaatcatgctttggtctctcgttgtcttgtaacttgtttggttatagtggag |
10494655 |
T |
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| Q |
130 |
ggcttgacggttttgtttcatgttcggggtttattttgagtattttagactattattctatctttgtactgtattttgggtgttgtttgtttagtttttg |
229 |
Q |
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| T |
10494654 |
ggcttgacggttttgtttcatgttcggggtttattttgagtattttagactattattctatc-ttgtactgtattttgggtgttgtttgtttagtttttg |
10494556 |
T |
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| Q |
230 |
gattgtatcaagcatgcttatgtcgnnnnnnncgtnnnnnnnnttatcattttttctttcaactttatctcagttatctcactt |
313 |
Q |
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| T |
10494555 |
gattgtatcaagcatgcttatgtcgtttttttcctaaaaaaatttatcattttttctttcaactttatctcagttatctcactt |
10494472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 451 - 488
Target Start/End: Complemental strand, 10494339 - 10494302
Alignment:
| Q |
451 |
atgcttataacatttcattgttaataatagaggtaata |
488 |
Q |
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| T |
10494339 |
atgcttataacatttcattgttaataatagaggtaata |
10494302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 415
Target Start/End: Complemental strand, 10494401 - 10494371
Alignment:
| Q |
385 |
aaacactacaaattccttcggttagtataac |
415 |
Q |
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| T |
10494401 |
aaacactacaaattccttcggttagtataac |
10494371 |
T |
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