View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1149_low_32 (Length: 484)
Name: NF1149_low_32
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_32 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 206 - 472
Target Start/End: Original strand, 37179248 - 37179513
Alignment:
| Q |
206 |
aggaagtatagacttgtggatataattgggg-ttttatttgtgtgtattaaattagatatgtagtgtgtatagaaattaggattaattctggctgtatgc |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
37179248 |
aggaagtatagacttgtggatataattgggggttttatttgagtgtattaaattagatatgtagtgtgtatagaaattaggattaatt--ggctgtatac |
37179345 |
T |
|
| Q |
305 |
attgtttgttgttatattctgcaagttttaattgtttgcatctacgtgaaaggggttcaagctctactaatatctttgaaaaaagataaatataaataat |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37179346 |
attgtttgttgttatattctgcaagttttaattgtttgcatttatctgaaaggggttcaagctctactaatatctttgaagaaagataaatataaataat |
37179445 |
T |
|
| Q |
405 |
tttgtaagtgttctttaagtcctaagttcttctctactttgaaattggtatcatcccctcaacgttca |
472 |
Q |
| |
|
||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37179446 |
tttataagtgttctttaagtcctaagttcttccctactttaaaattggtatcatcccctcaacgttca |
37179513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 37179206 - 37179245
Alignment:
| Q |
28 |
catgatcaagaataagctttagttattgtcaactaatttt |
67 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
37179206 |
catgatcaagagtaagctttagttattgtcaaataatttt |
37179245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 420
Target Start/End: Original strand, 18553767 - 18553815
Alignment:
| Q |
372 |
taatatctttgaaaaaagataaatataaataattttgtaagtgttcttt |
420 |
Q |
| |
|
||||||||||||| |||| ||||| |||||| |||||||| |||||||| |
|
|
| T |
18553767 |
taatatctttgaagaaagttaaatctaaatacttttgtaaatgttcttt |
18553815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 420
Target Start/End: Complemental strand, 41275465 - 41275433
Alignment:
| Q |
388 |
agataaatataaataattttgtaagtgttcttt |
420 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
41275465 |
agataaatataaatatttttgtaagtgttcttt |
41275433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University