View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_low_33 (Length: 481)
Name: NF1149_low_33
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 420; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 29 - 468
Target Start/End: Complemental strand, 20022885 - 20022447
Alignment:
| Q |
29 |
aaacttcatatgacaaacaattgttcttattattttactagatccacttttgccacttcgatcacttgtaatggtatgaaatttttgcaatgtggactgg |
128 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20022885 |
aaacttcatacgacaaacaattgttcttattattttactagatccacttttgccacttcgatcacttgtaatggtatgaaatttttgcaatgtggactgg |
20022786 |
T |
|
| Q |
129 |
ctcaaacgatgtggttgatggcttcatctgacaagtttgtctcgtaatctgatgactcctctttagatattttatagttggatggtagtggttcatgaaa |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
20022785 |
ctcaaacgatgtggttgatggcttcatctgacaagtttgtctcgtaatctgatgactcctctt-agatattttatagttggatggtagttgttcatgaaa |
20022687 |
T |
|
| Q |
229 |
aatttctggccaatcatcttctggatctaacataggagaatgtcgaaaattattactatttctttcaccaaccacggtggtaagcattatcattccaagt |
328 |
Q |
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| T |
20022686 |
aatttctggccaatcatcttctggatctaacataggagaatgtcgaaaattattactatttctttcaccaaccacggtggtaagcattatcattccaagt |
20022587 |
T |
|
| Q |
329 |
aaaagtaatactaatgaatatttagagtccatattttgatcgaattttgattaacacaatgaaaagatcgaaacaattatttataggaaaaaacctgaga |
428 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20022586 |
aaaagtaatactaatgaatatttagagcccatattttgatcgaattttgattaacacaatgaaaagatcgaaacaattatttataggaaaaaacctgaga |
20022487 |
T |
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| Q |
429 |
atattttgtgttgaggtcatcgatttatattattatgttc |
468 |
Q |
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| T |
20022486 |
atattttgtgttgaggtcatcgatttatattattatgttc |
20022447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 29 - 459
Target Start/End: Complemental strand, 20044469 - 20044039
Alignment:
| Q |
29 |
aaacttcatatgacaaacaattgttcttattattttactagatccacttttgccacttcgatcacttgtaatggtatgaaatttttgcaatgtggactgg |
128 |
Q |
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||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
20044469 |
aaacttcatataacaaacaattattcttattattttactagacccacttttgccacttcgatcacttgtaatgataagaaatttttgcaatgtggactgg |
20044370 |
T |
|
| Q |
129 |
ctcaaacgatgtggttgatggcttcatctgacaagtttgtctcgtaatctgatgactcctctttagatattttatagttggatggtagtggttcatgaaa |
228 |
Q |
| |
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|||||||| |||||||||||||||||| |||| |||||||||| ||||| | | |||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
20044369 |
ctcaaacggtgtggttgatggcttcatttgactagtttgtctcataatcaggtaactcctctttaggtattttatagtgggatggtagtggttcatgaaa |
20044270 |
T |
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| Q |
229 |
aatttctggccaatcatcttctggatctaacataggagaatgtcgaaaattattactatttctttcaccaaccacggtggtaagcattatcattccaagt |
328 |
Q |
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||| |||||||||| |||||||||||||||||||||| || | ||| |||||| |||| |||||||||| ||| |||||||||||||||||||||||| |
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| T |
20044269 |
aatctctggccaataatcttctggatctaacataggatcatattcaaatttattattattcctttcaccaatcacagtggtaagcattatcattccaagt |
20044170 |
T |
|
| Q |
329 |
aaaagtaatactaatgaatatttagagtccatattttgatcgaattttgattaacacaatgaaaagatcgaaacaattatttataggaaaaaacctgaga |
428 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||| ||||||| |||||||||||||| |||| ||| |
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| T |
20044169 |
aaaagtaatactaatgaatatttagagctcatattttgatcgaattttgattgacacactggaaagagtgaaacaactatttataggaaaacacctaaga |
20044070 |
T |
|
| Q |
429 |
atattttgtgttgaggtcatcgatttatatt |
459 |
Q |
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||||||||||||||||||||| ||||||||| |
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| T |
20044069 |
atattttgtgttgaggtcatcaatttatatt |
20044039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 29 - 459
Target Start/End: Complemental strand, 20033361 - 20032931
Alignment:
| Q |
29 |
aaacttcatatgacaaacaattgttcttattattttactagatccacttttgccacttcgatcacttgtaatggtatgaaatttttgcaatgtggactgg |
128 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
20033361 |
aaacttcatatgacaaacaatttttcttattattttactagacccacttttgccacttcgatcacttgtaatggtaaggaatttttgcaatgtggactgg |
20033262 |
T |
|
| Q |
129 |
ctcaaacgatgtggttgatggcttcatctgacaagtttgtctcgtaatctgatgactcctctttagatattttatagttggatggtagtggttcatgaaa |
228 |
Q |
| |
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|||||||| |||||||||||||||||| ||||||||||||||| ||||| | |||||||||||||| ||||||||||| ||||||||| ||||||| ||| |
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| T |
20033261 |
ctcaaacggtgtggttgatggcttcatttgacaagtttgtctcataatcaggtgactcctctttaggtattttatagtaggatggtagcggttcattaaa |
20033162 |
T |
|
| Q |
229 |
aatttctggccaatcatcttctggatctaacataggagaatgtcgaaaattattactatttctttcaccaaccacggtggtaagcattatcattccaagt |
328 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||| || | ||| |||||| ||| |||||||||| ||| ||||| |||||||||||||||||| |
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| T |
20033161 |
aatctctggccaatcatcttctggatctaacataggatcatattcaaatttattatcattcctttcaccaatcacagtggtgagcattatcattccaagt |
20033062 |
T |
|
| Q |
329 |
aaaagtaatactaatgaatatttagagtccatattttgatcgaattttgattaacacaatgaaaagatcgaaacaattatttataggaaaaaacctgaga |
428 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||| || ||||| ||||||| ||||||||| |||| |||| ||| |
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| T |
20033061 |
aaaagtaatactaatgaatatttagagctcatattttgatcaaattttgattgacacactggaaagagtgaaacaactatttatagaaaaacacctaaga |
20032962 |
T |
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| Q |
429 |
atattttgtgttgaggtcatcgatttatatt |
459 |
Q |
| |
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|||||||| |||||||||||| ||||||||| |
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| T |
20032961 |
atattttgcgttgaggtcatcaatttatatt |
20032931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 380
Target Start/End: Complemental strand, 20116146 - 20116071
Alignment:
| Q |
305 |
gtggtaagcattatcattccaagtaaaagtaatactaatgaatatttagagtccatattttgatcgaattttgatt |
380 |
Q |
| |
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||||||| ||| ||||||||||||| ||||||||||| ||| ||| ||||| |||| |||| |||||||||||||| |
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| T |
20116146 |
gtggtaaccatcatcattccaagtagaagtaatactattgagtatgtagaggccatgtttttatcgaattttgatt |
20116071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 376
Target Start/End: Complemental strand, 20067443 - 20067386
Alignment:
| Q |
319 |
cattccaagtaaaagtaatactaatgaatatttagagtccatattttgatcgaatttt |
376 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||| |||| ||| ||||||||||| |
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|
| T |
20067443 |
cattccaagtataagtaatactagtgaatatttagaggccatgtttggatcgaatttt |
20067386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 376
Target Start/End: Complemental strand, 20084846 - 20084775
Alignment:
| Q |
305 |
gtggtaagcattatcattccaagtaaaagtaatactaatgaatatttagagtccatattttgatcgaatttt |
376 |
Q |
| |
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||||||| ||| |||||| |||||| ||||||||||| ||||||| ||||| |||| ||| ||||||||||| |
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| T |
20084846 |
gtggtaaccatcatcatttcaagtagaagtaatactattgaatatgtagaggccatgtttggatcgaatttt |
20084775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 387
Target Start/End: Complemental strand, 20071517 - 20071451
Alignment:
| Q |
321 |
ttccaagtaaaagtaatactaatgaatatttagagtccatattttgatcgaattttgattaacacaa |
387 |
Q |
| |
|
||||||||| ||||||||||||||| ||| ||||| |||| ||| ||||||||||| ||| |||||| |
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|
| T |
20071517 |
ttccaagtagaagtaatactaatgagtatgtagaggccatgtttggatcgaattttaatttacacaa |
20071451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 387
Target Start/End: Complemental strand, 20078552 - 20078470
Alignment:
| Q |
305 |
gtggtaagcattatcattccaagtaaaagtaatactaatgaatatttagagtccatattttgatcgaattttgattaacacaa |
387 |
Q |
| |
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||||||| ||| ||||||||||||| ||||||||||| ||| ||| ||||| |||| ||| ||| ||||||| ||| |||||| |
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| T |
20078552 |
gtggtaaccatcatcattccaagtagaagtaatactattgagtatgtagaggccatgtttggattgaattttaatttacacaa |
20078470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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