View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1149_low_34 (Length: 479)

Name: NF1149_low_34
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1149_low_34
NF1149_low_34
[»] chr6 (13 HSPs)
chr6 (1-393)||(34819869-34820261)
chr6 (249-469)||(34819841-34820061)
chr6 (35-117)||(34820530-34820612)
chr6 (311-393)||(34820530-34820612)
chr6 (35-116)||(34820296-34820377)
chr6 (311-392)||(34820296-34820377)
chr6 (41-117)||(34820653-34820729)
chr6 (317-393)||(34820653-34820729)
chr6 (177-241)||(34835101-34835165)
chr6 (78-117)||(34820807-34820846)
chr6 (354-393)||(34820807-34820846)
chr6 (35-117)||(34820413-34820495)
chr6 (311-393)||(34820413-34820495)


Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 34819869 - 34820261
Alignment:
Q  1 actcttccctttcttctttaaaggacatgcctcagcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgata 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||    
T  34819869 actcttccctttcttctttaaaggacatgcctcaacgagttgatggtcaatcttagcttgcaaaaccaccgcatacgtaccatcatcatttttggtgata 34819968  T
Q  101 ctctcgtcaataaaacttccagcaaagatttctgattcagacttagatcttcttattgcttttgcactaaacacatttattctcgttcctttatgttctt 200  Q
    |||||||||| |||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||| |||||||||||||||    
T  34819969 ctctcgtcaacaaaactcccagccaagatttctgattcagacttggatcttctaattgcttttgcactaaacacatttagtctcattcctttatgttctt 34820068  T
Q  201 ggcagctaactcttttctcaactggtggctttgtacaaatactatcatcattcttcttgtttgtctcgcctttatcactcttccctttcttctttaaagg 300  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34820069 ggcagctaactcttttctcagctggtggctttgtacaaatactaccatcattcttcttggttgtctcgcctttatcactcttccctttcttctttaaagg 34820168  T
Q  301 acatgcctcagcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaact 393  Q
    | | |||||||||||||||||||||| || ||||| ||||  |||||   || ||||||||| |||||| ||||| |||||||||| ||||||    
T  34820169 agacgcctcagcgagttgatggtcaacctcagcttccaaagtcacctatgacgtaccaacattattttttgtgatgctctcgtcaacaaaact 34820261  T

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Target: chr6; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 249 - 469
Target Start/End: Original strand, 34819841 - 34820061
Alignment:
Q  249 cattcttcttgtttgtctcgcctttatcactcttccctttcttctttaaaggacatgcctcagcgagttgatggtcaatcttagcttgcaaaaccacctc 348  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  34819841 cattcttcttgttggcctcgcctttatcactcttccctttcttctttaaaggacatgcctcaacgagttgatggtcaatcttagcttgcaaaaccaccgc 34819940  T
Q  349 atacataccaacatcatttttggtgatactctcgtcaataaaacttccagcaaagatttctgattcagacttagatcttcttattgcttttgcactaatc 448  Q
    |||| ||||| ||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||| |||||||| |||||||||||||||| |    
T  34819941 atacgtaccatcatcatttttggtgatactctcgtcaacaaaactcccagccaagatttctgattcagacttggatcttctaattgcttttgcactaaac 34820040  T
Q  449 acatttattctcgttccttta 469  Q
    ||||||| |||| ||||||||    
T  34820041 acatttagtctcattccttta 34820061  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 117
Target Start/End: Original strand, 34820530 - 34820612
Alignment:
Q  35 gcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaact 117  Q
    ||||| |||||||||| || | ||| ||||||||||||  ||||||| |||||| |||| |||||||| ||||||| ||||||    
T  34820530 gcgagctgatggtcaagctcaacttccaaaaccacctccgacataccgacatcaattttagtgatactttcgtcaacaaaact 34820612  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 393
Target Start/End: Original strand, 34820530 - 34820612
Alignment:
Q  311 gcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaact 393  Q
    ||||| |||||||||| || | ||| ||||||||||||  ||||||| |||||| |||| |||||||| ||||||| ||||||    
T  34820530 gcgagctgatggtcaagctcaacttccaaaaccacctccgacataccgacatcaattttagtgatactttcgtcaacaaaact 34820612  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 35 - 116
Target Start/End: Original strand, 34820296 - 34820377
Alignment:
Q  35 gcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaac 116  Q
    |||||||||||||||| |  | ||| |||| |||||||  || |||||| ||||||||| |||||||||||||||| |||||    
T  34820296 gcgagttgatggtcaaccacaacttccaaagccacctctgacgtaccaaaatcattttttgtgatactctcgtcaacaaaac 34820377  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 311 - 392
Target Start/End: Original strand, 34820296 - 34820377
Alignment:
Q  311 gcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaac 392  Q
    |||||||||||||||| |  | ||| |||| |||||||  || |||||| ||||||||| |||||||||||||||| |||||    
T  34820296 gcgagttgatggtcaaccacaacttccaaagccacctctgacgtaccaaaatcattttttgtgatactctcgtcaacaaaac 34820377  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 34820653 - 34820729
Alignment:
Q  41 tgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaact 117  Q
    ||||||| || || ||||| |||| |||||||  || |||||| ||||||||| |||||||||||||||| ||||||    
T  34820653 tgatggttaacctcagcttccaaagccacctctgacgtaccaatatcattttttgtgatactctcgtcaacaaaact 34820729  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 393
Target Start/End: Original strand, 34820653 - 34820729
Alignment:
Q  317 tgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaact 393  Q
    ||||||| || || ||||| |||| |||||||  || |||||| ||||||||| |||||||||||||||| ||||||    
T  34820653 tgatggttaacctcagcttccaaagccacctctgacgtaccaatatcattttttgtgatactctcgtcaacaaaact 34820729  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 34835101 - 34835165
Alignment:
Q  177 ttattctcgttcctttatgttcttggcagctaactcttttctcaactggtggctttgtacaaata 241  Q
    |||||||| ||||||||||||| || || |||||||||||||| || || | |||||||||||||    
T  34835101 ttattctcattcctttatgttcatgacacctaactcttttctcgaccggcgtctttgtacaaata 34835165  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 117
Target Start/End: Original strand, 34820807 - 34820846
Alignment:
Q  78 taccaacatcatttttggtgatactctcgtcaataaaact 117  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  34820807 taccaacatcattttttgtgatactctcgtcaacaaaact 34820846  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 393
Target Start/End: Original strand, 34820807 - 34820846
Alignment:
Q  354 taccaacatcatttttggtgatactctcgtcaataaaact 393  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  34820807 taccaacatcattttttgtgatactctcgtcaacaaaact 34820846  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 117
Target Start/End: Original strand, 34820413 - 34820495
Alignment:
Q  35 gcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaact 117  Q
    ||||| |||||||||| || | ||| ||||||||||||  |  ||||||||||||||||  ||| ||||||||||| ||||||    
T  34820413 gcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacactctcgtcaacaaaact 34820495  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 393
Target Start/End: Original strand, 34820413 - 34820495
Alignment:
Q  311 gcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaact 393  Q
    ||||| |||||||||| || | ||| ||||||||||||  |  ||||||||||||||||  ||| ||||||||||| ||||||    
T  34820413 gcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacactctcgtcaacaaaact 34820495  T

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