View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_low_36 (Length: 463)
Name: NF1149_low_36
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 270
Target Start/End: Original strand, 38027991 - 38028251
Alignment:
| Q |
10 |
aataatatgattaaaataaaacaaaaattagttggtacaaatgaaaataatgcacactttgatatagaaatagacctttctacatgaagcatatgcttca |
109 |
Q |
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| T |
38027991 |
aataatatggttaaaataaaacaaaaattagttggtacaaatgaaaacaatgcacactttgatatagaaatagacctttctacatgaagcatatgcttca |
38028090 |
T |
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| Q |
110 |
tgcaccaatgatgccataccaacacattcaaagcaataatctgctcccccaccagtcatctctatgataacctgactcacagatttgttttccaattctc |
209 |
Q |
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| T |
38028091 |
tgcaccaatgatgccataccaacacattcaaagcaataatctgctcccccaccagtcatctctatgataacctgactcacagatttgttttccaattctc |
38028190 |
T |
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| Q |
210 |
caggatttacaaagtctgtgactccaaacttctttgctgagtaaaggggaggaacaaaaac |
270 |
Q |
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| T |
38028191 |
caggatttacaaagtctgtgactccaaacttctttgctgagtaaagggggggaacaaaaac |
38028251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 83 - 179
Target Start/End: Complemental strand, 35611545 - 35611449
Alignment:
| Q |
83 |
acctttctacatgaagcatatgcttcatgcaccaatgatgccataccaacacattcaaagcaataatctgctcccccaccagtcatctctatgataa |
179 |
Q |
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| T |
35611545 |
acctttctacaagaagcatatgcttcatgcaccaatgatgccataccgacacattcaaaacaataatctgctcctccatcagtcatctctatgataa |
35611449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 83 - 182
Target Start/End: Complemental strand, 35615891 - 35615792
Alignment:
| Q |
83 |
acctttctacatgaagcatatgcttcatgcaccaatgatgccataccaacacattcaaagcaataatctgctcccccaccagtcatctctatgataacct |
182 |
Q |
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| T |
35615891 |
acctttctgcaagaagcatacgcgtcttgcaccaatgatgccataccgacacactcaaagcaataatctgctcccccatcagtcatctctgtgatgacct |
35615792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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