View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1149_low_37 (Length: 461)

Name: NF1149_low_37
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1149_low_37
NF1149_low_37
[»] chr6 (9 HSPs)
chr6 (83-427)||(2602135-2602479)
chr6 (91-204)||(33234849-33234962)
chr6 (105-203)||(12843971-12844069)
chr6 (157-398)||(17261714-17261962)
chr6 (361-426)||(19294667-19294732)
chr6 (105-203)||(14494435-14494533)
chr6 (105-203)||(17540085-17540183)
chr6 (123-202)||(57082-57162)
chr6 (304-399)||(33234694-33234790)
[»] chr2 (6 HSPs)
chr2 (91-401)||(17651313-17651628)
chr2 (116-283)||(18724652-18724819)
chr2 (89-199)||(44649966-44650077)
chr2 (361-426)||(26576401-26576466)
chr2 (94-203)||(34409577-34409687)
chr2 (155-371)||(41849126-41849347)
[»] chr1 (7 HSPs)
chr1 (91-399)||(16426486-16426802)
chr1 (91-223)||(3387709-3387843)
chr1 (91-223)||(50127135-50127268)
chr1 (97-203)||(3955010-3955116)
chr1 (94-203)||(48632578-48632688)
chr1 (108-203)||(126323-126419)
chr1 (356-426)||(48632335-48632405)
[»] chr8 (15 HSPs)
chr8 (91-223)||(18393525-18393659)
chr8 (83-169)||(2796240-2796326)
chr8 (118-414)||(13097519-13097824)
chr8 (83-169)||(2875409-2875495)
chr8 (83-169)||(2889764-2889850)
chr8 (83-169)||(3145285-3145371)
chr8 (83-205)||(27401869-27401991)
chr8 (83-169)||(3159877-3159963)
chr8 (83-223)||(1226102-1226245)
chr8 (304-426)||(2874860-2874983)
chr8 (96-201)||(15131966-15132071)
chr8 (154-201)||(31772559-31772606)
chr8 (76-203)||(44502330-44502457)
chr8 (304-372)||(2797251-2797320)
chr8 (155-203)||(8690159-8690207)
[»] scaffold0012 (1 HSPs)
scaffold0012 (91-223)||(209243-209377)
[»] scaffold1723 (1 HSPs)
scaffold1723 (91-271)||(265-445)
[»] chr3 (3 HSPs)
chr3 (132-237)||(42718559-42718665)
chr3 (356-426)||(25092138-25092208)
chr3 (94-202)||(29697008-29697116)
[»] chr7 (14 HSPs)
chr7 (106-283)||(9729790-9729969)
chr7 (95-247)||(11820479-11820633)
chr7 (94-203)||(37338759-37338868)
chr7 (91-223)||(27993956-27994093)
chr7 (89-222)||(48598361-48598495)
chr7 (94-184)||(32716528-32716618)
chr7 (89-173)||(11809304-11809388)
chr7 (93-236)||(11810876-11811021)
chr7 (361-426)||(44572289-44572354)
chr7 (95-171)||(6439797-6439873)
chr7 (315-409)||(11809061-11809156)
chr7 (94-203)||(27616382-27616492)
chr7 (154-247)||(11815469-11815563)
chr7 (101-144)||(25445505-25445549)
[»] chr4 (3 HSPs)
chr4 (107-232)||(32593896-32594018)
chr4 (109-203)||(45612436-45612530)
chr4 (361-426)||(54305958-54306023)
[»] chr5 (3 HSPs)
chr5 (109-203)||(40837975-40838068)
chr5 (94-199)||(38989252-38989355)
chr5 (119-203)||(32676631-32676716)


Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 83 - 427
Target Start/End: Original strand, 2602135 - 2602479
Alignment:
Q  83 aaaaggtatataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaacc 182  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2602135 aaaaggtatataacaagatacaatagtatttaccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaacc 2602234  T
Q  183 ctagttgatcaacatttctcacagatttaactcttgaatctgttgtgtgtggaagtaaagaaaaataatcctgatatttatttgagttgcccgacacgcc 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2602235 ctagttgatcaacatttctcacagatttaactcttgaatctgttgtgtgtggaagtaaagaaaaataatcctgatatttatttgagttgcccgacacgcc 2602334  T
Q  283 tatatgtattataggtgtcaaacaccggtccaaggagtgtcaaaataaagtagaaaacaactcattttggcacttgtccgacacgtgtcgtatgtgtgtc 382  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2602335 tatatgtgttataggtgtcaaacaccggtccaaggagtgtcaaaataaagtagaaaacaactcattttggcacttgtccgacacgtgtcgtatgtgtgtc 2602434  T
Q  383 atagcagtgtcggacactgcgacacgcttaatcctaaaggtgtct 427  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  2602435 atagcagtgtcggacactgcgacacgcttaatcctaaaggtgtct 2602479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 91 - 204
Target Start/End: Complemental strand, 33234962 - 33234849
Alignment:
Q  91 tataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaaccctagttga 190  Q
    |||||||||||||||||||||||| |||| |||||||||| |||||||||||| || |||  ||||||||||||||||||||| ||||| ||||  ||||    
T  33234962 tataacaagatacaatagtatttgacctt-atttatccatctactatcgaaaatttcaaaa-tgttgtaatcaactttaatgtctataaccccttcttga 33234865  T
Q  191 tc--aacatttctcac 204  Q
    ||  ||||||||||||    
T  33234864 tcaaaacatttctcac 33234849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 12843971 - 12844069
Alignment:
Q  105 atagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaaccctagttgatcaacatttctca 203  Q
    |||||||||| ||||||||||| ||| ||||||| |||||  ||||  || | ||||||||| |||||| ||||| ||||| |||||||||||||||||    
T  12843971 atagtatttgacctttatttattcatctactatcaaaaaagctaaaaatgatataatcaactataatgtgtataacccctaattgatcaacatttctca 12844069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 157 - 398
Target Start/End: Original strand, 17261714 - 17261962
Alignment:
Q  157 gtaatcaactttaatgtttataaaccctagttgatcaacatttctcacagat--ttaactcttgaatctgttgtgtgtggaagtaaagaaaaataatcct 254  Q
    |||||||||||||||||  |||| ||||  ||||||||||||||||||| ||  ||||||||| |||||  |||||||||||| | ||||||| | || |    
T  17261714 gtaatcaactttaatgtacataacccctcattgatcaacatttctcacacatctttaactcttaaatctaatgtgtgtggaagcagagaaaaaaattcat 17261813  T
Q  255 gatatttatttgagttgcccgacacgcct---atatgtattat--aggtgtcaaacaccggtccaaggagtgtcaaaataaagtagaaaacaactcattt 349  Q
     | || | ||||| ||| ||||||| | |   ||| || |||   |||||||  ||||||||| ||| |||||| |||||||| |||||||| || ||||    
T  17261814 -acatatgtttgaattgtccgacacacttcatataagtgttaagcaggtgtcggacaccggtctaagaagtgtcgaaataaagaagaaaacaccttattt 17261912  T
Q  350 tggca-cttgtccgacacgtgtcgtatgtgtgtcatagcagtgtcggaca 398  Q
     || | |||||| ||||||||||||| | ||||| ||| ||||| |||||    
T  17261913 aggaatcttgtcggacacgtgtcgtacgagtgtcgtaggagtgttggaca 17261962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 361 - 426
Target Start/End: Original strand, 19294667 - 19294732
Alignment:
Q  361 cgacacgtgtcgtatgtgtgtcatagcagtgtcggacactgcgacacgcttaatcctaaaggtgtc 426  Q
    |||||||||||||| | |||||| || |||||||||||| ||||||||| |||||||| |||||||    
T  19294667 cgacacgtgtcgtacgggtgtcacaggagtgtcggacaccgcgacacgcctaatcctagaggtgtc 19294732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 203
Target Start/End: Complemental strand, 14494533 - 14494435
Alignment:
Q  105 atagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaaccctagttgatcaacatttctca 203  Q
    |||||||||| ||||||||||| | | || |||| ||||| |||||  || | ||||||||| | |||| ||||| ||||| |||||||||||||||||    
T  14494533 atagtatttgacctttatttattcgtctattatcaaaaaagttaaaaatgatataatcaactatgatgtctataacccctaattgatcaacatttctca 14494435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 17540085 - 17540183
Alignment:
Q  105 atagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaaccctagttgatcaacatttctca 203  Q
    |||||||||| |||||||||||  || ||||||| |||||  ||||  || | ||||||||| |||  ||||||| ||||| |||||||||||||||||    
T  17540085 atagtatttgacctttatttatttatctactatcaaaaaagctaaaaatgatataatcaactataacttttataacccctaattgatcaacatttctca 17540183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 57082 - 57162
Alignment:
Q  123 ttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaacc-ctagttgatcaacatttctc 202  Q
    |||| ||| ||||||| |||||  ||||  |||| |||||||||||||||| ||||| || ||||||||||||||||||||    
T  57082 ttattcatctactatcaaaaaaggtaaaaatgttataatcaactttaatgtctataaccctctagttgatcaacatttctc 57162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 399
Target Start/End: Complemental strand, 33234790 - 33234694
Alignment:
Q  304 acaccggtccaaggagtgtcaaaataaagtagaaaacaactcattt-tggcacttgtccgacacgtgtcgtatgtgtgtcatagcagtgtcggacac 399  Q
    |||||||||||| |||| || || |||||  |||||||||| |||| || ||||||||| |||||||||||| | ||||| |||  ||||| |||||    
T  33234790 acaccggtccaaagagtatcgaagtaaagatgaaaacaacttatttatgacacttgtccaacacgtgtcgtacgagtgtcttagatgtgtccgacac 33234694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 6e-38; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 91 - 401
Target Start/End: Original strand, 17651313 - 17651628
Alignment:
Q  91 tataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaaccctagttga 190  Q
    ||||||||| ||||||| |||||| ||||||||||||||| |||||| |||||| ||||||  |||||||||||||||||||| ||||| | || |||||    
T  17651313 tataacaagttacaataatatttggcctttatttatccatctactattgaaaaacttaaatacgttgtaatcaactttaatgtctataacctctcgttga 17651412  T
Q  191 tcaacatttctcacaga--tttaactcttgaatctgttgtgtgtggaagtaaagaaaaat-aatcctgatatttatttgagttgcccgacacgcct-ata 286  Q
    ||||||||| ||||| |  |||||||||||||||| ||||||||| |||   |||||||| ||||  ||||||| | | ||||| ||||||||||| |||    
T  17651413 tcaacatttttcacacacctttaactcttgaatctattgtgtgtgaaag--cagaaaaataaatctagatatttgtctaagttgtccgacacgcctcata 17651510  T
Q  287 ----tgtattataggtgtcaaacaccggtccaaggagtgtcaaaataaagtagaaaacaactcattttgg-cacttgtccgacacgtgtcgtatgtgtgt 381  Q
        |||  |||| |||||  ||||||||| |||||||||| || ||||| ||||||||||| |||| || ||||||| ||||| |||| |||   ||||    
T  17651511 taagtgttatataagtgtcggacaccggtcaaaggagtgtcgaagtaaagaagaaaacaact-atttaggacacttgttcgaca-gtgttgtacaagtgt 17651608  T
Q  382 catagcagtgtcggacactg 401  Q
    ||||  ||||||||||||||    
T  17651609 cataagagtgtcggacactg 17651628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 116 - 283
Target Start/End: Complemental strand, 18724819 - 18724652
Alignment:
Q  116 cctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaaccctagttgatcaacatttctcacaga--tttaac 213  Q
    ||||| ||||||||| |||||| | |||||||||||| | ||| ||||||||| |||| |||||  ||| |||||||| ||||||||||| |  ||||||    
T  18724819 cctttctttatccatctactattggaaaatttaaatgcgctgtcatcaactttgatgtctataattcctcgttgatcagcatttctcacacatctttaac 18724720  T
Q  214 tcttgaatctgttgtgtgtggaagtaaagaaaaataatcctgatatttatttgagttgcccgacacgcct 283  Q
    ||||||||||  | |||| ||||||| ||||||  ||| | ||||||| | ||||||| | |||||||||    
T  18724719 tcttgaatctactatgtgcggaagtagagaaaa--aattcagatatttgtctgagttgtctgacacgcct 18724652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 89 - 199
Target Start/End: Complemental strand, 44650077 - 44649966
Alignment:
Q  89 tatataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataa-accctagt 187  Q
    |||| |||||||||| |||| ||||| ||||||||||| ||| ||||||| ||||| |||||  ||||||||||||||||||| | |||||  ||||| |    
T  44650077 tataaaacaagataccatagaatttgacctttatttattcatctactatcaaaaaagttaaaaatgttgtaatcaactttaatttctataagcccctaat 44649978  T
Q  188 tgatcaacattt 199  Q
    ||||||||||||    
T  44649977 tgatcaacattt 44649966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 426
Target Start/End: Original strand, 26576401 - 26576466
Alignment:
Q  361 cgacacgtgtcgtatgtgtgtcatagcagtgtcggacactgcgacacgcttaatcctaaaggtgtc 426  Q
    |||||||||||||| | ||||||||| |||||||||||| ||||||||  || ||||| |||||||    
T  26576401 cgacacgtgtcgtacgggtgtcataggagtgtcggacaccgcgacacgtctagtcctagaggtgtc 26576466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 203
Target Start/End: Complemental strand, 34409687 - 34409577
Alignment:
Q  94 aacaagatacaatagtatttgccctttatttatccatgtactatc-gaaaaatttaaatgtgttgtaatcaactttaatgtttataaaccctagttgatc 192  Q
    |||||||||  |||||||||| |||||||||||  || |||  || ||||||  ||||  || | ||||||||| |||||| ||||| ||||| ||||||    
T  34409687 aacaagatattatagtatttgacctttatttatttatctaccgtcagaaaaagctaaaaatgatataatcaactataatgtctataacccctaattgatc 34409588  T
Q  193 aacatttctca 203  Q
    |||||||||||    
T  34409587 aacatttctca 34409577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 371
Target Start/End: Original strand, 41849126 - 41849347
Alignment:
Q  155 ttgtaatcaactttaatgtttataaaccctagttgatcaacatttctcacagat--ttaactcttgaatctgttgtgtgtggaagtaaagaaaaataatc 252  Q
    |||||||||||||||||||  | ||  ||| |||| ||||| ||||||||| ||  |||| ||||||||||  | ||||  |||| | ||||||| |||     
T  41849126 ttgtaatcaactttaatgtccagaatgcctcgttgctcaacttttctcacacatctttaattcttgaatctactatgtg--gaagcagagaaaaa-aatt 41849222  T
Q  253 ctgatatttatttgagttgcccgacacgcct---atatgtattata--ggtgtcaaacaccggtccaaggagtgtcaaaataaagtagaaaacaactcat 347  Q
    | || |||| ||||||||| |||||||||||   ||| || |||||  ||||||  ||||| |||||||||||||| |||||||  |||||| |||| ||    
T  41849223 cagacatttgtttgagttgtccgacacgcctcatataagtgttatataggtgtcggacaccagtccaaggagtgtcgaaataaaaaagaaaataacttat 41849322  T
Q  348 tttgg-cacttgtccgacacgtgtc 371  Q
    || || ||||||| ||| |||||||    
T  41849323 ttaggacacttgttcgatacgtgtc 41849347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 91 - 399
Target Start/End: Original strand, 16426486 - 16426802
Alignment:
Q  91 tataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaaccctagttga 190  Q
    ||||||||  |||||||||||||| |||||||||||| || || ||| ||||||||||||||   |||||||||||||||||| |||||  ||| |||||    
T  16426486 tataacaaattacaatagtatttggcctttatttatctatctattattgaaaaatttaaatgcactgtaatcaactttaatgtctataactcctcgttga 16426585  T
Q  191 tcaacatttctcacaga--tttaa-ctcttgaatctgttgtgtgtggaagtaaagaaaaataatcctgatatttatttgagttgcccgacacgcc---ta 284  Q
    ||||||||||||||| |  ||||| | |||||||||  | ||||| |||| ||||||||| |||||  |||||| ||||||||| || |||||||   ||    
T  16426586 tcaacatttctcacacatctttaaccccttgaatctactatgtgtagaagcaaagaaaaaaaatccgtatatttgtttgagttgtccaacacgcctcata 16426685  T
Q  285 tatgtattat---aggtgtcaaacaccggtccaaggagtgtcaaaataaagtagaaaacaactcattt-tggcacttgtccgacacgtgtcgtatgtgtg 380  Q
    || || ||||   ||||||| |||| |||||||| |||||||||| ||||| | |||| |||| |||| || ||||||| |||||| ||||||| | ||     
T  16426686 taagtgttatataaggtgtcgaaca-cggtccaaagagtgtcaaagtaaagaaaaaaaaaacttatttatgacacttgttcgacacatgtcgtacgagt- 16426783  T
Q  381 tcatagcagtgtcggacac 399  Q
    |||||| ||||||||||||    
T  16426784 tcataggagtgtcggacac 16426802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 91 - 223
Target Start/End: Original strand, 3387709 - 3387843
Alignment:
Q  91 tataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaaccctagttga 190  Q
    |||||||||||| ||||||||||| ||||||||||| ||| ||| |||||||||||||||   |||||||||||||||||||| ||||| || |  ||||    
T  3387709 tataacaagataaaatagtatttgacctttatttattcatctaccatcgaaaaatttaaaaacgttgtaatcaactttaatgtctataacccttgattga 3387808  T
Q  191 tcaacatttctcacaga--tttaactcttgaatct 223  Q
    ||||||||||||||| |  ||||||||||||||||    
T  3387809 tcaacatttctcacacatctttaactcttgaatct 3387843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 91 - 223
Target Start/End: Complemental strand, 50127268 - 50127135
Alignment:
Q  91 tataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaaccctagttga 190  Q
    |||||||||||||||||||||||| ||||||||| || || ||||||||||||||||||||| | || | ||||||||||||| ||||| |||| ||| |    
T  50127268 tataacaagatacaatagtatttggcctttatttttc-atctactatcgaaaaatttaaatgcgctgcattcaactttaatgtctataacccctcgttaa 50127170  T
Q  191 tcaacatttctc--acagatttaactcttgaatct 223  Q
    |||| |||||||  |||  ||||||||||||||||    
T  50127169 tcaatatttctcatacatctttaactcttgaatct 50127135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 97 - 203
Target Start/End: Original strand, 3955010 - 3955116
Alignment:
Q  97 aagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaaccctagttgatcaaca 196  Q
    ||||||| || ||||||| ||||||||||||||| |||||||||||||  ||||   |||||||||||||||||| | | ||| |||| |||||||||||    
T  3955010 aagatacgatcgtatttgacctttatttatccatctactatcgaaaaagctaaaaacgttgtaatcaactttaatctctgtaaccccttgttgatcaaca 3955109  T
Q  197 tttctca 203  Q
    |||||||    
T  3955110 tttctca 3955116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 94 - 203
Target Start/End: Complemental strand, 48632688 - 48632578
Alignment:
Q  94 aacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaaccc-tagttgatc 192  Q
    |||||||||| |||||||||| ||||||||||| | | ||||||| |||||  ||||   |||||||||||||||||| | ||||| ||| || ||||||    
T  48632688 aacaagataccatagtatttgacctttatttattcttctactatcaaaaaagctaaaaacgttgtaatcaactttaatttctataaccccgtaattgatc 48632589  T
Q  193 aacatttctca 203  Q
    |||||||||||    
T  48632588 aacatttctca 48632578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 203
Target Start/End: Original strand, 126323 - 126419
Alignment:
Q  108 gtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataa--accctagttgatcaacatttctca 203  Q
    ||||||| ||||||||||| ||| ||||||  ||||| |||||  |||| |||||||||||||||| |||||   ||||| |||||||||||||||||    
T  126323 gtatttgacctttatttattcatctactatt-aaaaagttaaaaatgttataatcaactttaatgtctataacccccctaattgatcaacatttctca 126419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 426
Target Start/End: Complemental strand, 48632405 - 48632335
Alignment:
Q  356 ttgtccgacacgtgtcgtatgtgtgtcatagcagtgtcggacactgcgacacgcttaatcctaaaggtgtc 426  Q
    ||||||||| |||||| || | ||||||| | |||||||||||| ||||||||| || ||||| |||||||    
T  48632405 ttgtccgacgcgtgtcatacgagtgtcatgggagtgtcggacaccgcgacacgcctagtcctagaggtgtc 48632335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 91 - 223
Target Start/End: Complemental strand, 18393659 - 18393525
Alignment:
Q  91 tataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaaccctagttga 190  Q
    |||||||||||| ||||||||||| ||||||||||||||| ||||||| |||||||||||   |||||||||||||||||||| ||||| || |  ||||    
T  18393659 tataacaagataaaatagtatttgacctttatttatccatctactatcaaaaaatttaaaaacgttgtaatcaactttaatgtctataacccttgattga 18393560  T
Q  191 tcaacatttct--cacagatttaactcttgaatct 223  Q
    |||||||||||  ||||  ||||||||||||||||    
T  18393559 tcaacatttctcgcacatctttaactcttgaatct 18393525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 83 - 169
Target Start/End: Original strand, 2796240 - 2796326
Alignment:
Q  83 aaaaggtatataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaacttta 169  Q
    ||||||| ||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||  ||||||||||||||||    
T  2796240 aaaaggtctataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaatacgttgtaatcaacttta 2796326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 118 - 414
Target Start/End: Original strand, 13097519 - 13097824
Alignment:
Q  118 tttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaaccctagttgatcaacatttctcacaga--tttaactc 215  Q
    ||||||||| ||| |||||| |||||||| |||  |||| ||||||||||||||||  |||| | || |||||||||||||||||||| |  ||||||||    
T  13097519 tttatttattcatctactattgaaaaattaaaaaatgttttaatcaactttaatgtccataacctcttgttgatcaacatttctcacacatctttaactc 13097618  T
Q  216 ttgaatctgttgtgtgtggaagtaaaga-aaaataatcctgatatttatttgagttgcccgacacgcct-ata----tgtattataggtgtcaaacaccg 309  Q
    ||||||||  |||||||||||| | ||| |||| ||  |  | |||| ||||| ||| ||||||||| | |||    |||  ||||||||||  ||||||    
T  13097619 ttgaatctactgtgtgtggaagcagagacaaaaaaaatcaaacatttgtttgaattgtccgacacgcttcatataagtgttatataggtgtcgcacaccg 13097718  T
Q  310 gtccaaggagtgtcaaaataaagtagaaaacaactcattttgg-cacttgtccgacacgtgtcgtatgtgtgtcatagcagtgtcggacactgcgacacg 408  Q
    ||| ||||||||||| | ||||| |||||| | || |||| ||  |||| |||||| ||||||||| | ||||||||  |||||||||||| ||||||||    
T  13097719 gtctaaggagtgtcacagtaaagaagaaaatatcttatttaggatacttatccgactcgtgtcgtacgagtgtcatatgagtgtcggacaccgcgacacg 13097818  T
Q  409 cttaat 414  Q
    | ||||    
T  13097819 cctaat 13097824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 83 - 169
Target Start/End: Complemental strand, 2875495 - 2875409
Alignment:
Q  83 aaaaggtatataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaacttta 169  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||   ||||||||||||||||    
T  2875495 aaaaggtttataacaagatacaatagtatttggcctttatttatccatctactattgaaaaatttaaacacgttgtaatcaacttta 2875409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 83 - 169
Target Start/End: Complemental strand, 2889850 - 2889764
Alignment:
Q  83 aaaaggtatataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaacttta 169  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||   |||||| |||||||||    
T  2889850 aaaaggtctataacaagatacaatagtatttggcctttatttatccatctactatcgaaaaatttaaaaacgttgtattcaacttta 2889764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 83 - 169
Target Start/End: Original strand, 3145285 - 3145371
Alignment:
Q  83 aaaaggtatataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaacttta 169  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||   |||||| |||||||||    
T  3145285 aaaaggtctataacaagatacaatagtatttggcctttatttatccatctactatcgaaaaatttaaaaacgttgtattcaacttta 3145371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 83 - 205
Target Start/End: Original strand, 27401869 - 27401991
Alignment:
Q  83 aaaaggtatataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaacc 182  Q
    ||||| |||||||||||||||||||| ||||| ||||||||||||||| |||||| |||| |   |||   |||||||||||||||||||| ||||| ||    
T  27401869 aaaagttatataacaagatacaatagaatttggcctttatttatccatctactattgaaagaaaaaaaaacgttgtaatcaactttaatgtctataaccc 27401968  T
Q  183 ctagttgatcaacatttctcaca 205  Q
    || |||||||||||||| |||||    
T  27401969 ctcgttgatcaacatttttcaca 27401991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 83 - 169
Target Start/End: Original strand, 3159877 - 3159963
Alignment:
Q  83 aaaaggtatataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaacttta 169  Q
    ||||||| ||||||||| |||||||||||||| ||||||||||||||| || ||||||||||||||||   ||||||||||||||||    
T  3159877 aaaaggtctataacaagttacaatagtatttggcctttatttatccatctaatatcgaaaaatttaaacacgttgtaatcaacttta 3159963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 83 - 223
Target Start/End: Original strand, 1226102 - 1226245
Alignment:
Q  83 aaaaggtatataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaacc 182  Q
    ||||| |||| |||||||||| | ||||||||  |||||||||| ||| ||||||| |||||||||||  ||||||||||||||||||| | ||||||||    
T  1226102 aaaagttataaaacaagataccagagtatttgatctttatttattcatctactatc-aaaaatttaaaaatgttgtaatcaactttaatttctataaacc 1226200  T
Q  183 -ctagttgatcaacatttct---cacagatttaactcttgaatct 223  Q
     ||| ||||| |||||||||   |||| |||||||||||| ||||    
T  1226201 tctaattgattaacatttctcaacacatatttaactcttgtatct 1226245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 304 - 426
Target Start/End: Complemental strand, 2874983 - 2874860
Alignment:
Q  304 acaccggtccaaggagtgtcaaaataaagtagaaaacaactcattttg-gcacttgtccgacacgtgtcgtatgtgtgtcatagcagtgtcggacactgc 402  Q
    ||||| ||||||||||||||||||||||| ||||||| | | |||| |  |||||||| ||||||||| ||||| |||||||||  |||||||| || ||    
T  2874983 acaccagtccaaggagtgtcaaaataaagaagaaaaccatttatttagtacacttgtctgacacgtgttgtatgagtgtcataggcgtgtcggagaccgc 2874884  T
Q  403 gacacgcttaatcctaaaggtgtc 426  Q
    |||| || |||||||| |||||||    
T  2874883 gacatgcgtaatcctagaggtgtc 2874860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 201
Target Start/End: Complemental strand, 15132071 - 15131966
Alignment:
Q  96 caagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaaccctagttgatcaac 195  Q
    |||||||  ||||||||||  ||||||||||  || |||||||||||||  ||||  || | ||||||||| |||||| ||||| ||||| ||||||||     
T  15132071 caagatatcatagtatttgatctttatttatttatctactatcgaaaaagctaaaaatgatataatcaactataatgtctataacccctaattgatcaat 15131972  T
Q  196 atttct 201  Q
    ||||||    
T  15131971 atttct 15131966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 31772559 - 31772606
Alignment:
Q  154 gttgtaatcaactttaatgtttataaaccctagttgatcaacatttct 201  Q
    |||||||||||||||||||||  ||| |||| ||||||||||||||||    
T  31772559 gttgtaatcaactttaatgttggtaaccccttgttgatcaacatttct 31772606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 203
Target Start/End: Original strand, 44502330 - 44502457
Alignment:
Q  76 catcatcaaaaggtatataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgttt 175  Q
    |||||| ||||| | || |||||||||  ||| |||||| ||||||||||| ||| | ||||| ||||| |||||  |  | ||||||||| |||||| |    
T  44502330 catcataaaaagttctacaacaagatatcatactatttgacctttatttattcatctgctatcaaaaaagttaaaaataatataatcaactataatgtct 44502429  T
Q  176 ataaaccctagttgatcaacatttctca 203  Q
    |||| ||||| |  ||||||||||||||    
T  44502430 ataacccctaatcaatcaacatttctca 44502457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 372
Target Start/End: Original strand, 2797251 - 2797320
Alignment:
Q  304 acaccggtccaaggagtgtcaaaataaagtagaaaacaactcattttg-gcacttgtccgacacgtgtcg 372  Q
    ||||| ||||||||||||||||||||||| ||||||| | | |||| |  |||||||| |||||||||||    
T  2797251 acaccagtccaaggagtgtcaaaataaaggagaaaaccatttatttagtacacttgtctgacacgtgtcg 2797320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 8690159 - 8690207
Alignment:
Q  155 ttgtaatcaactttaatgtttataaaccctagttgatcaacatttctca 203  Q
    ||||||||||||||||||||||||| |  |  |||||||||||||||||    
T  8690159 ttgtaatcaactttaatgtttataatctattattgatcaacatttctca 8690207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 91 - 223
Target Start/End: Original strand, 209243 - 209377
Alignment:
Q  91 tataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaaccctagttga 190  Q
    |||||||| |||||| | |||||| ||||||||||||||| ||| |||||||||||||||   |||||||| |||||||||||  |||| |||| |||||    
T  209243 tataacaaaatacaacaatatttggcctttatttatccatctacaatcgaaaaatttaaaaacgttgtaataaactttaatgtcgataacccctcgttga 209342  T
Q  191 tcaacatttctcacaga--tttaactcttgaatct 223  Q
    ||||||||||||||| |  ||||||||||||||||    
T  209343 tcaacatttctcacaaatctttaactcttgaatct 209377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1723 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 91 - 271
Target Start/End: Complemental strand, 445 - 265
Alignment:
Q  91 tataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaaccctagttga 190  Q
    |||||||||||||||||||||||| ||||||||||||||| | |||||| |||||| ||||  |||| |||||||||| ||||  |||| || | |||||    
T  445 tataacaagatacaatagtatttgacctttatttatccatctgctatcg-aaaattgaaatacgttggaatcaactttgatgtccataacccattgttga 347  T
Q  191 tcaacatttctcacaga--tttaactcttgaatctgttgtgtgtggaagtaaagaaaaataatcctgatatttatttgagttg 271  Q
    ||||||||||||||| |  |||||| |||||||||  ||||||| |||| | | ||||| ||||| ||||||| | |||||||    
T  346 tcaacatttctcacacatctttaacccttgaatctactgtgtgtagaagcaga-aaaaaaaatccagatatttgtctgagttg 265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 42718665 - 42718559
Alignment:
Q  132 tactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaaccctagttgatcaacatttctcaca-gatttaactcttgaatctgttgtgt 230  Q
    |||||| ||||| |||||||| |||| ||||||||||||||||||||| |||| |||| ||||||||||||||| | |||||||||| ||||| ||||||    
T  42718665 tactattgaaaattttaaatgcgttggaatcaactttaatgtttataatccctcgttgttcaacatttctcacacgttttaactcttaaatctattgtgt 42718566  T
Q  231 gtggaag 237  Q
    |||||||    
T  42718565 gtggaag 42718559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 426
Target Start/End: Complemental strand, 25092208 - 25092138
Alignment:
Q  356 ttgtccgacacgtgtcgtatgtgtgtcatagcagtgtcggacactgcgacacgcttaatcctaaaggtgtc 426  Q
    ||||||||||||||| ||| | ||||||||| |||||| ||||||||||||| | || ||||| |||||||    
T  25092208 ttgtccgacacgtgttgtacgagtgtcatagaagtgtcagacactgcgacacacctagtcctagaggtgtc 25092138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 29697008 - 29697116
Alignment:
Q  94 aacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaaccctagttgatca 193  Q
    |||||||||||||| ||||||  |||||||||| ||| | |||||| ||||  ||||  ||||  |||||| |||||||| ||||| ||||  |||| ||    
T  29697008 aacaagatacaatattatttgagctttatttatacatctgctatcgtaaaagctaaaaatgttagaatcaattttaatgtctataacccctccttgaaca 29697107  T
Q  194 acatttctc 202  Q
    |||||||||    
T  29697108 acatttctc 29697116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 106 - 283
Target Start/End: Complemental strand, 9729969 - 9729790
Alignment:
Q  106 tagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaaccctagttgatcaacatttctcaca 205  Q
    |||||||||  |||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||  | || |  | ||||||||||||||||||||    
T  9729969 tagtatttggactttatttatccacctactatcgaaaaatttaaatgcgttgtaatcaactttaatgtaaaaaacctttcgttgatcaacatttctcaca 9729870  T
Q  206 ga--tttaactcttgaatctgttgtgtgtggaagtaaagaaaaataatcctgatatttatttgagttgcccgacacgcct 283  Q
     |  |||||||||||||||   |  ||||| ||| | | ||||  ||||  ||||||| ||||||||| |||||||||||    
T  9729869 catctttaactcttgaatccactccgtgtgaaagcagaaaaaataaatctagatatttgtttgagttgtccgacacgcct 9729790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 95 - 247
Target Start/End: Complemental strand, 11820633 - 11820479
Alignment:
Q  95 acaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaaccctagttgatcaa 194  Q
    |||| ||||||||| |||||  ||||||||||  || ||||||  |||| ||||||  ||||||||||| ||||||||| ||||| || | |||||||||    
T  11820633 acaacatacaatagcatttgagctttatttatttatctactattaaaaattttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaa 11820534  T
Q  195 catttctcacaga--tttaactcttgaatctgttgtgtgtggaagtaaagaaaaa 247  Q
    ||||||||||| |  ||||||||||||||||  |||||||||||| | |||||||    
T  11820533 catttctcacacatctttaactcttgaatctactgtgtgtggaagcagagaaaaa 11820479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 94 - 203
Target Start/End: Complemental strand, 37338868 - 37338759
Alignment:
Q  94 aacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaaccctagttgatca 193  Q
    |||||||||  |||||||||| ||||||||||| ||| ||||||| ||||| |||||  |||| | ||||||||||||||||| || ||||| |||||||    
T  37338868 aacaagatatcatagtatttgacctttatttattcatctactatcaaaaaagttaaaaatgttattatcaactttaatgtttaaaatccctaattgatca 37338769  T
Q  194 acatttctca 203  Q
    ||||||||||    
T  37338768 acatttctca 37338759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 91 - 223
Target Start/End: Original strand, 27993956 - 27994093
Alignment:
Q  91 tataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtg---ttgtaatcaactttaatgtttataaaccctagt 187  Q
    |||||||||||||||||| | |||  |||||||||||||| ||| |||||||||||||||  ||   ||||||| ||||||||||| ||||||||||  |    
T  27993956 tataacaagatacaatagcaattgatctttatttatccatctaccatcgaaaaatttaaaaatgcatttgtaataaactttaatgtctataaaccctcct 27994055  T
Q  188 tgatcaacatttctcacaga--tttaactcttgaatct 223  Q
    |||| || |||||||||| |  ||||||||||||||||    
T  27994056 tgataaatatttctcacacatctttaactcttgaatct 27994093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 89 - 222
Target Start/End: Original strand, 48598361 - 48598495
Alignment:
Q  89 tatataacaagatacaatagtatttgccctttatttatcca-tgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaaccctagt 187  Q
    ||||||||| |||||||||||||||| |||||||||||||| | || |||| ||||||| |||   ||||||| |||||||||| | |||  |||||  |    
T  48598361 tatataacacgatacaatagtatttgacctttatttatccactata-tatcaaaaaattaaaaaacgttgtaaccaactttaatatctat-gaccctcat 48598458  T
Q  188 tgatcaacatttctcacaga--tttaactcttgaatc 222  Q
    |||||||||||||||||| |  |||||||||||||||    
T  48598459 tgatcaacatttctcacacatctttaactcttgaatc 48598495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 94 - 184
Target Start/End: Complemental strand, 32716618 - 32716528
Alignment:
Q  94 aacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaaccct 184  Q
    |||||||||||||||||||||  |||||||||| |||  |||||||||||| |||||  || || |||||| |||||||| ||||| ||||    
T  32716618 aacaagatacaatagtatttgatctttatttattcatccactatcgaaaaagttaaaaatggtgcaatcaattttaatgtctataatccct 32716528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 11809388 - 11809304
Alignment:
Q  89 tatataacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgt 173  Q
    |||||||||||||||||||||||||| ||||||||  | ||| |||  || |||||||||||   ||||||||||| ||||||||    
T  11809388 tatataacaagatacaatagtatttggcctttattacttcatctaccgtcaaaaaatttaaaaaggttgtaatcaaatttaatgt 11809304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 236
Target Start/End: Complemental strand, 11811021 - 11810876
Alignment:
Q  93 taacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaaccctagttgatc 192  Q
    ||||||||||||||| |||||| |||||||| ||  || |||| ||  ||||||||||   |  || ||||  ||| |||| |||||||||| | |||||    
T  11811021 taacaagatacaataatatttgacctttattaatttatctactgtcataaaatttaaaaacgccgttatcattttttatgtctataaaccctcgctgatc 11810922  T
Q  193 aacatttctcaca--gatttaactcttgaatctgttgtgtgtggaa 236  Q
    |||||||||||||  | ||||||||||||||||  | |||||||||    
T  11810921 aacatttctcacaaggctttaactcttgaatctactttgtgtggaa 11810876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 426
Target Start/End: Complemental strand, 44572354 - 44572289
Alignment:
Q  361 cgacacgtgtcgtatgtgtgtcatagcagtgtcggacactgcgacacgcttaatcctaaaggtgtc 426  Q
    |||||||||||||| | ||||||||| |||||||||||| ||||||||| || || || |||||||    
T  44572354 cgacacgtgtcgtacgagtgtcataggagtgtcggacaccgcgacacgcctagtcgtagaggtgtc 44572289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 6439797 - 6439873
Alignment:
Q  95 acaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaat 171  Q
    ||||||||| |||||||||| | | ||||||| ||  |||||||||||||  ||||  |||||||||||||||||||    
T  6439797 acaagatacgatagtatttgacatctatttattcaactactatcgaaaaagataaaaatgttgtaatcaactttaat 6439873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 409
Target Start/End: Complemental strand, 11809156 - 11809061
Alignment:
Q  315 aggagtgtcaaaataaagtagaaaacaactcattt-tggcacttgtccgacacgtgtcgtatgtgtgtcatagcagtgtcggacactgcgacacgc 409  Q
    |||| ||||||| ||||| |||||| ||||  ||| || |||||||||||||| |||||||||||||| ||   |||||| ||||| |||||||||    
T  11809156 aggaatgtcaaagtaaagaagaaaataacttgtttatgacacttgtccgacacatgtcgtatgtgtgttattatagtgtcagacaccgcgacacgc 11809061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 203
Target Start/End: Original strand, 27616382 - 27616492
Alignment:
Q  94 aacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataa-accctagttgatc 192  Q
    |||||||||  |||||||||| | ||||||||| ||| |||||||  ||||  ||||  |||| |||||||||||||||| |||||  ||||| |||| |    
T  27616382 aacaagatatcatagtatttgacttttatttatacatctactatcagaaaagctaaaaatgttataatcaactttaatgtctataaccccctaattgacc 27616481  T
Q  193 aacatttctca 203  Q
    | |||||||||    
T  27616482 atcatttctca 27616492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 11815563 - 11815469
Alignment:
Q  154 gttgtaatcaactttaatgtttataaaccctagttgatcaacatttctcacagattt--aactcttgaatctgttgtgtgtggaagtaaagaaaaa 247  Q
    |||||||||||||||||| | ||||| | || |||||||||||||||||| | || |  |||||||||||||  || |||| |||||| |||||||    
T  11815563 gttgtaatcaactttaatatctataa-ctctcgttgatcaacatttctcaaacatctctaactcttgaatctactgcgtgtagaagtagagaaaaa 11815469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 144
Target Start/End: Original strand, 25445505 - 25445549
Alignment:
Q  101 tacaatagtatttgcccttt-atttatccatgtactatcgaaaaa 144  Q
    |||||||||||||| ||||| |||||||||| |||||||||||||    
T  25445505 tacaatagtatttggccttttatttatccatctactatcgaaaaa 25445549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 107 - 232
Target Start/End: Original strand, 32593896 - 32594018
Alignment:
Q  107 agtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaaccctagttgatcaacatttctcacag 206  Q
    |||||||  ||||||||||||||| |||| || ||||||||||||||||||||||||| |||||||||||  |  |||  |||||||||||||||||||     
T  32593896 agtatttagcctttatttatccatctactctcaaaaaatttaaatgtgttgtaatcaa-tttaatgttta--actcctcattgatcaacatttctcacat 32593992  T
Q  207 atttaactcttgaatctgttgtgtgt 232  Q
     ||||||||||||||||  |||||||    
T  32593993 ctttaactcttgaatctactgtgtgt 32594018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 203
Target Start/End: Complemental strand, 45612530 - 45612436
Alignment:
Q  109 tatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaaccctagttgatcaacatttctca 203  Q
    |||||| ||||||||||| ||| ||||||| |||||  ||||  || | ||||||||| |||||| ||||||||||  || ||||||||||||||    
T  45612530 tatttgacctttatttattcatctactatcaaaaaagctaaaaatgatataatcaactataatgtctataaacccttattaatcaacatttctca 45612436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 426
Target Start/End: Original strand, 54305958 - 54306023
Alignment:
Q  361 cgacacgtgtcgtatgtgtgtcatagcagtgtcggacactgcgacacgcttaatcctaaaggtgtc 426  Q
    |||||||||||||| | ||||||||| |||||||||||| | ||||||| || ||||| |||||||    
T  54305958 cgacacgtgtcgtacgggtgtcataggagtgtcggacaccgtgacacgcctagtcctagaggtgtc 54306023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 40837975 - 40838068
Alignment:
Q  109 tatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaaccctagttgatcaacatttctca 203  Q
    |||||| ||||||||||| ||| ||||||| |||||  ||||  |||| |||| |||| |||||||||| | ||||| |||||||||||||||||    
T  40837975 tatttgacctttatttattcatctactatc-aaaaagctaaaaatgttataataaactataatgtttattacccctaattgatcaacatttctca 40838068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 199
Target Start/End: Complemental strand, 38989355 - 38989252
Alignment:
Q  94 aacaagatacaatagtatttgccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttataaaccctagttgatca 193  Q
    |||||||||  |||||||||| | ||||||||| ||| ||||||| ||| |||||||  || | ||||||| |  ||||| ||||| ||||| |||||||    
T  38989355 aacaagatatcatagtatttgacttttatttattcatctactatcaaaagatttaaaaatgatataatcaaat--aatgtctataacccctaattgatca 38989258  T
Q  194 acattt 199  Q
    ||||||    
T  38989257 acattt 38989252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 203
Target Start/End: Complemental strand, 32676716 - 32676631
Alignment:
Q  119 ttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaactttaatgtttata-aaccctagttgatcaacatttctca 203  Q
    |||||||| ||| ||||||| ||||| |||||  |||| |||||||||||||||| ||||   ||||| |||| ||||||||||||    
T  32676716 ttatttattcatctactatcaaaaaagttaaaaatgttataatcaactttaatgtctatatccccctaattgaacaacatttctca 32676631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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