View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1149_low_38 (Length: 460)

Name: NF1149_low_38
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1149_low_38
NF1149_low_38
[»] chr1 (6 HSPs)
chr1 (90-416)||(40694939-40695264)
chr1 (3-60)||(40695266-40695323)
chr1 (45-132)||(15322212-15322300)
chr1 (3-79)||(48400948-48401023)
chr1 (34-87)||(563857-563910)
chr1 (183-220)||(22066368-22066405)
[»] chr3 (3 HSPs)
chr3 (45-90)||(46621515-46621560)
chr3 (34-112)||(15462088-15462166)
chr3 (6-82)||(26988677-26988752)
[»] chr2 (2 HSPs)
chr2 (175-222)||(24578119-24578166)
chr2 (33-87)||(22417298-22417352)
[»] scaffold0071 (1 HSPs)
scaffold0071 (34-112)||(26-104)
[»] chr7 (2 HSPs)
chr7 (1-64)||(10711677-10711739)
chr7 (185-281)||(42003785-42003881)
[»] chr5 (2 HSPs)
chr5 (185-227)||(2586485-2586527)
chr5 (47-88)||(22023743-22023784)


Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-159; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 90 - 416
Target Start/End: Complemental strand, 40695264 - 40694939
Alignment:
Q  90 acataaagtgtgcgaaaaactcaataagatgaaaaagaatgtgcgttaannnnnnnatcacaaatgaggtcttaaacaagttttaatatgatgcattttt 189  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  40695264 acataaggtgtgcgaaaaactcaataaaatgaaaaagaatgtgcgttaattttta-atcacaaatgaggtcttaaacaagttttaatatgatgcattttt 40695166  T
Q  190 tgtttgcatatgaagtctttttgtttataaaatttgataaaaataattttgttggtagaattaaagcaagagctttagtagccttatccttggatcggcc 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40695165 tgtttgcatatgaagtctttttgtttataaaatttgataaaaataattttgttggtagaattaaagcaagagctttagtagccttacccttggatcggcc 40695066  T
Q  290 tttctttcatggatagtcctcccaatttgtacgattaaataattaaattgtcatgtttccattttgttaggtagattctatgagtgtccactctttctgg 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  40695065 tttctttcatggatagtcctcccaatttgtacgattaaataattaaattgtcatgtttccattttgtttggtagattctatgagtgtccactctttctgg 40694966  T
Q  390 tgacataacaactaataatcttctctc 416  Q
    |||||||||||||||||||||||||||    
T  40694965 tgacataacaactaataatcttctctc 40694939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 40695323 - 40695266
Alignment:
Q  3 ttcggattctgaaattcaaaatgttttaagtgtgttttagaggattttataaggtgtt 60  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  40695323 ttcggattctgaaatttgaaatgttttaagtgtgttttagaggattttataaggtgtt 40695266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 132
Target Start/End: Complemental strand, 15322300 - 15322212
Alignment:
Q  45 gattttataaggtgtttatgccgtttgaattttataattcgaattacataaagtgtgcgaaaaactcaataaga-tgaaaaagaatgtg 132  Q
    |||||||||| ||||||||| ||||||||||||||||| | |||||||||| |   |||| |||| ||||||||  |||||||||||||    
T  15322300 gattttataaagtgtttatgtcgtttgaattttataatccaaattacataatgcacgcgagaaacgcaataagacggaaaaagaatgtg 15322212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 48400948 - 48401023
Alignment:
Q  3 ttcggattctgaaattcaaaatgttttaagtgtgttttagaggattttataaggtgtttatgccgtttgaattttat 79  Q
    |||||||||| |||| | |||||||||||  ||||||| |||| ||||||| ||||||||||||||  |||||||||    
T  48400948 ttcggattctaaaatccgaaatgttttaac-gtgttttggaggtttttatagggtgtttatgccgtccgaattttat 48401023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 563857 - 563910
Alignment:
Q  34 gtgttttagaggattttataaggtgtttatgccgtttgaattttataattcgaa 87  Q
    ||||||| |||||||||||| |||||||||| | ||| |||| |||||||||||    
T  563857 gtgtttttgaggattttatagggtgtttatgtcatttaaattctataattcgaa 563910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 22066405 - 22066368
Alignment:
Q  183 cattttttgtttgcatatgaagtctttttgtttataaa 220  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  22066405 cattttttgtttgcatgtgaagtttttttgtttataaa 22066368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 46621560 - 46621515
Alignment:
Q  45 gattttataaggtgtttatgccgtttgaattttataattcgaatta 90  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||    
T  46621560 gattttataaggtgtttatgttgtttgaattttataattcgaatta 46621515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 112
Target Start/End: Original strand, 15462088 - 15462166
Alignment:
Q  34 gtgttttagaggattttataaggtgtttatgccgtttgaattttataattcgaattacataaagtgtgcgaaaaactca 112  Q
    |||||||||||| ||||||  ||||||||||||||||| ||| ||||||||||| | ||||| | | |||| |||||||    
T  15462088 gtgttttagaggtttttatggggtgtttatgccgtttggattctataattcgaactgcataaggagcgcgagaaactca 15462166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 26988752 - 26988677
Alignment:
Q  6 ggattctgaaattcaaaatgttttaagtgtgttttagaggattttataaggtgtttatgccgtttgaattttataat 82  Q
    ||||||| ||||||||||| |||||| ||| |||| ||| |||||||   ||||||||||||||| |||| ||||||    
T  26988752 ggattctaaaattcaaaattttttaa-tgtatttttgagaattttatggagtgtttatgccgtttaaattctataat 26988677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 24578166 - 24578119
Alignment:
Q  175 atatgatgcattttttgtttgcatatgaagtctttttgtttataaaat 222  Q
    |||||| |||||||| ||||| ||||||||||||||||||||||||||    
T  24578166 atatgaggcatttttagtttgtatatgaagtctttttgtttataaaat 24578119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 22417298 - 22417352
Alignment:
Q  33 tgtgttttagaggattttataaggtgtttatgccgtttgaattttataattcgaa 87  Q
    |||||||| |||| ||||||| ||||||||||||||||| ||| |||||| ||||    
T  22417298 tgtgttttggaggtttttatagggtgtttatgccgtttggattatataatccgaa 22417352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 112
Target Start/End: Complemental strand, 104 - 26
Alignment:
Q  34 gtgttttagaggattttataaggtgtttatgccgtttgaattttataattcgaattacataaagtgtgcgaaaaactca 112  Q
    |||||||||||| ||||||  ||||||||||||||||| ||| ||||||||||| | ||||| | | |||| |||||||    
T  104 gtgttttagaggtttttatggggtgtttatgccgtttggattctataattcgaactgcataaggagcgcgagaaactca 26  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 10711677 - 10711739
Alignment:
Q  1 tgttcggattctgaaattcaaaatgttttaagtgtgttttagaggattttataaggtgtttatg 64  Q
    ||||||||||||||||| | ||||||||||| |||||||| || | ||||||| ||||||||||    
T  10711677 tgttcggattctgaaatccgaaatgttttaa-tgtgttttggaaggttttatagggtgtttatg 10711739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 281
Target Start/End: Complemental strand, 42003881 - 42003785
Alignment:
Q  185 ttttttgtttgcatatgaagtctttttgtttataaaatttgataaaaataattttgttggtagaattaaagcaagagctttagtagccttatccttg 281  Q
    ||||| |||||||||||  |  ||||| |||||||||| | ||||  ||  ||||||||| |||| ||||||||  ||||||||||||||| |||||    
T  42003881 tttttagtttgcatatgtgggatttttatttataaaatataataattatttttttgttgggagaactaaagcaacggctttagtagccttacccttg 42003785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 2586485 - 2586527
Alignment:
Q  185 ttttttgtttgcatatgaagtctttttgtttataaaatttgat 227  Q
    |||||||||||||||||| | ||||||| ||||||||||||||    
T  2586485 ttttttgtttgcatatgaggcctttttgcttataaaatttgat 2586527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 22023784 - 22023743
Alignment:
Q  47 ttttataaggtgtttatgccgtttgaattttataattcgaat 88  Q
    ||||||| ||||||||||||||| ||||| ||||||||||||    
T  22023784 ttttatagggtgtttatgccgttggaattctataattcgaat 22023743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University