View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_low_4 (Length: 811)
Name: NF1149_low_4
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 528; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 98 - 774
Target Start/End: Complemental strand, 260752 - 260085
Alignment:
| Q |
98 |
acactccctgcaacaggtatcaccttttttcgcttttctcccaatcnnnnnnnnnnnnnnnnnnnnttaggctgcctataggataaaaatatgttcttgg |
197 |
Q |
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| T |
260752 |
acactccctgcaacaggtatcaccttttttcgcttttctcccaatcttattattatt---------ttaggctgcctgtaggatagaaatatgttcttgg |
260662 |
T |
|
| Q |
198 |
agttctaacctctcaaatttatgctaaattgatgtgatcct-aacatgtttacccttcacaagaattattattcaatcatgcaataaaaacaaccaaatt |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
260661 |
agttctaacctctcaaatttatgctaaattgatgtgatccttaacatgtttacccttcacaagaattattattcaatcatgcaataaaaacaaccaaatt |
260562 |
T |
|
| Q |
297 |
tatctgtgttatttcggtattagatgatgtcgctgtcttgttttaacagctctttcattccattgaggtaatctttgatttgatagaaaacttagagaat |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
260561 |
tatctgtgttatttcggtattagatgatgtcgctgtcttgttttaacagctctttcattccattgaggtaatctttgatttgatagaaaacttagagaat |
260462 |
T |
|
| Q |
397 |
tgtctaaagttcnnnnnnnatgttcaagagcaacttatgcttctttcatagtgtaagatgggttgaaagttgatgagtggatttgagttttcattttgtt |
496 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
260461 |
tgtctaaagttctttttttatgttcaagagcaacttatgcttctttcgtagtgtaagatgggttgaaagttgatgagtggatttgagttttcattttgtt |
260362 |
T |
|
| Q |
497 |
catttaaatgggctgtaacatatattcaaatacattgaagaaaggactagagcattgaagtaaggagataaggctttatgaggaagaatgacattcacgg |
596 |
Q |
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| T |
260361 |
catttaaatgggctgcaacatatattcaaatacattgaagaaaggactagagcattgaagtaaggagataaggctttatgaggaagaatgacattcacag |
260262 |
T |
|
| Q |
597 |
actggttacactttagagaataatctacccaccctagtttaatgaatgtttattttttcgtgtaacaattcggcaagctgaacaactttttacgtatatg |
696 |
Q |
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||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
260261 |
actggttacactttagagattaat-gaaccaccctagtttaatgaatgtttattttttcgtgtaacaattcggcaagctgaacaactttttacgtatatg |
260163 |
T |
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| Q |
697 |
tatcacacccaaaatgaataaatggaagtagaatttccttttttcattttatggaacggttaccttattattatttgc |
774 |
Q |
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|||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
260162 |
tatcacgcccaaaatgaataaatggaagtagaatgtccttttttcattttatggagtggttaccttattattatttgc |
260085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 754 - 792
Target Start/End: Original strand, 259499 - 259537
Alignment:
| Q |
754 |
ggttaccttattattatttgctccttcaatctttcatca |
792 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |
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| T |
259499 |
ggttactttattattatttgctccttcaatctttcatca |
259537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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