View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_low_42 (Length: 448)
Name: NF1149_low_42
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 30 - 439
Target Start/End: Complemental strand, 39110269 - 39109860
Alignment:
| Q |
30 |
acaaaaaccacccatctttcttctttgctaaggctattcaacatactttccctcaaaatagaaggcaatgcaattaccattacttcttgaagtcttttga |
129 |
Q |
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| T |
39110269 |
acaaaaaccacccatctttcttctttgctaaggctattcaacatactttccctcaaaatagaaggcactgcaattaccattacttcttgaagtcttttga |
39110170 |
T |
|
| Q |
130 |
tggatgcagttgtgcctgagccacagaagatgattgcatcatcttctccgccacctaagcatttcttaatgtactcagttgcttcatgtagcatttttgt |
229 |
Q |
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| T |
39110169 |
tggatgcagttgtgcctgagccacagaagatgattgcatcatcttctccgccacctaagcatttcttaatgtactcagttgcttcatgtagcatttttgt |
39110070 |
T |
|
| Q |
230 |
tgttctgcttcccacataactgtcgcaagtatgagtattccctgtccaagaataacaaggctaaaagagatgctcacacattaatattttttagtctctt |
329 |
Q |
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| T |
39110069 |
tgttctgcttcccacataactgtcgcaagtatgagtattccctgtccaagaataacaaggctaaaagagatgctcacacattaatattttttagtctctt |
39109970 |
T |
|
| Q |
330 |
gtcttctataattttctccatcaacctaaatgctttggttgcaaatcatcaattttggtctctttattagaggaagttttggttggtgacaactatttag |
429 |
Q |
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| T |
39109969 |
gtcttctataattttctccatcaacctaaatgctttggttgcaaatcatcaattttggtctctttattagaggaagttttggttggtgacaactatttgg |
39109870 |
T |
|
| Q |
430 |
acatattatt |
439 |
Q |
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| T |
39109869 |
acatactatt |
39109860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 28 - 268
Target Start/End: Complemental strand, 39101162 - 39100922
Alignment:
| Q |
28 |
caacaaaaaccacccatctttcttctttgctaaggctattcaacatactttccctcaaaatagaaggcaatgcaattaccattacttcttgaagtctttt |
127 |
Q |
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||||||||||||||||||||||||||| |||||||| ||||||| ||||| |||||||||||||| | | ||| |||||||||||||||| || || |
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| T |
39101162 |
caacaaaaaccacccatctttcttcttcgctaaggcacctcaacattctttctctcaaaatagaagggacaactattcccattacttcttgaagcctctt |
39101063 |
T |
|
| Q |
128 |
gatggatgcagttgtgcctgagccacagaagatgattgcatcatcttctccgccacctaagcatttcttaatgtactcagttgcttcatgtagcattttt |
227 |
Q |
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||||| ||| |||| ||| ||||| || | |||| |||||| ||||| || |||||||||||||| |||||||||| ||||||||||||| ||||||| |
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| T |
39101062 |
gatggctgccgttgcgcccgagccgcatagcatgagtgcatcgtcttccccaccacctaagcattttttaatgtacttggttgcttcatgtaccattttt |
39100963 |
T |
|
| Q |
228 |
gttgttctgcttcccacataactgtcgcaagtatgagtatt |
268 |
Q |
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||||| ||| |||| || ||||| || |||||||| ||||| |
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| T |
39100962 |
gttgtcctgtttccaacgtaactctcacaagtatgggtatt |
39100922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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