View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1149_low_45 (Length: 435)

Name: NF1149_low_45
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1149_low_45
NF1149_low_45
[»] chr7 (4 HSPs)
chr7 (150-432)||(1446029-1446311)
chr7 (272-375)||(1459554-1459657)
chr7 (150-260)||(12105210-12105320)
chr7 (278-375)||(12104995-12105092)
[»] chr6 (2 HSPs)
chr6 (150-254)||(10116766-10116870)
chr6 (272-324)||(10117272-10117324)
[»] chr2 (11 HSPs)
chr2 (159-258)||(1399496-1399595)
chr2 (153-260)||(1403199-1403306)
chr2 (150-260)||(821085-821195)
chr2 (277-355)||(974971-975049)
chr2 (150-259)||(410192-410301)
chr2 (277-355)||(409787-409865)
chr2 (272-318)||(1399319-1399365)
chr2 (272-318)||(1403014-1403060)
chr2 (150-188)||(965484-965522)
chr2 (150-244)||(982099-982193)
chr2 (296-333)||(404574-404611)
[»] chr5 (1 HSPs)
chr5 (277-364)||(36198844-36198931)
[»] chr3 (1 HSPs)
chr3 (285-373)||(45810754-45810842)


Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 150 - 432
Target Start/End: Original strand, 1446029 - 1446311
Alignment:
Q  150 caaacctgataaaattcaatattttgaagcttagggcaaaggtagagcacacgttgaactataccccaactgtagctgagcaccaaatgagtcaaattat 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1446029 caaacctgataaaattcaatattttgaagcttagggcaaaggtagagcacacgttgaactataccccaactgtagctgagcaccaaatgagtcaaattat 1446128  T
Q  250 ggaatgtaggagagctaaaagtcttgtatagttttatgcgtagaaactccacatttgaaagtgctttcatcggaacatcgcaattacattcaataatatc 349  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1446129 ggaatgtaggagagttaaaagtcttgtatagttttatgcgtagaaactccacatttgaaagtgctttcatcggaacatcgcaattacattcaataatatc 1446228  T
Q  350 tgctctaatcaactttgttaaggtttcacaacatctgttgggatcaagaaaagtgagataggatatatgatattgttggagat 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  1446229 tgctctaatcaactttgttaaggtttcacaacatctgttgggatcaagaaaagtgagataggatatatgatatagttgaagat 1446311  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 272 - 375
Target Start/End: Original strand, 1459554 - 1459657
Alignment:
Q  272 cttgtatagttttatgcgtagaaactccacatttgaaagtgctttcatcggaacatcgcaattacattcaataatatctgctctaatcaactttgttaag 371  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||| ||||  |||||| ||||| |||||||||||||||| ||||||||||||||    
T  1459554 cttggatagttttatgtgtagaaactccacatttgaaagtgctttcatccgaaccccgcaatcacattgaataatatctgctctattcaactttgttaag 1459653  T
Q  372 gttt 375  Q
    ||||    
T  1459654 gttt 1459657  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 150 - 260
Target Start/End: Complemental strand, 12105320 - 12105210
Alignment:
Q  150 caaacctgataaaattcaatattttgaagcttagggcaaaggtagagcacacgttgaactataccccaactgtagctgagcaccaaatgagtcaaattat 249  Q
    ||||||||| |||  |||| ||||||||||||||| |||||||  ||||  | | |||||||| ||||| | |||| |||||||||||||||||||||||    
T  12105320 caaacctgaaaaaggtcaagattttgaagcttaggacaaaggtgcagcattcttggaactatatcccaattatagcagagcaccaaatgagtcaaattat 12105221  T
Q  250 ggaatgtagga 260  Q
    |||||||||||    
T  12105220 ggaatgtagga 12105210  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 375
Target Start/End: Complemental strand, 12105092 - 12104995
Alignment:
Q  278 tagttttatgcgtagaaactccacatttgaaagtgctttcatcggaacatcgcaattacattcaataatatctgctctaatcaactttgttaaggttt 375  Q
    ||||||||| |||||||||||| | || |||| || || |||||||| || | ||| ||| || ||||||||||||||  ||||||||||||||||||    
T  12105092 tagttttatccgtagaaactccgcgttcgaaactgtttccatcggaatatagaaatcacaatccataatatctgctcttttcaactttgttaaggttt 12104995  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 150 - 254
Target Start/End: Original strand, 10116766 - 10116870
Alignment:
Q  150 caaacctgataaaattcaatattttgaagcttagggcaaaggtagagcacacgttgaactataccccaactgtagctgagcaccaaatgagtcaaattat 249  Q
    ||||||||||||| ||||| ||||||||| ||||||||| ||| ||||||  ||  ||||||| |||||   |||  |||||||||||||||||||||||    
T  10116766 caaacctgataaagttcaagattttgaaggttagggcaatggtggagcacttgtacaactatatcccaatcatagaggagcaccaaatgagtcaaattat 10116865  T
Q  250 ggaat 254  Q
    |||||    
T  10116866 ggaat 10116870  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 324
Target Start/End: Original strand, 10117272 - 10117324
Alignment:
Q  272 cttgtatagttttatgcgtagaaactccacatttgaaagtgctttcatcggaa 324  Q
    |||| |||||| ||||| ||||||||||| |||||||||||||||||||||||    
T  10117272 cttgaatagttgtatgcctagaaactccaaatttgaaagtgctttcatcggaa 10117324  T

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Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 159 - 258
Target Start/End: Complemental strand, 1399595 - 1399496
Alignment:
Q  159 taaaattcaatattttgaagcttagggcaaaggtagagcacacgttgaactataccccaactgtagctgagcaccaaatgagtcaaattatggaatgtag 258  Q
    |||||||||| ||||||||||||||||||| ||| ||||||  ||  || |||| | || || ||| ||||||||| |||||||||||||||||||||||    
T  1399595 taaaattcaagattttgaagcttagggcaatggtggagcacttgtacaattatatcacagctatagttgagcaccagatgagtcaaattatggaatgtag 1399496  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 153 - 260
Target Start/End: Complemental strand, 1403306 - 1403199
Alignment:
Q  153 acctgataaaattcaatattttgaagcttagggcaaaggtagagcacacgttgaactataccccaactgtagctgagcaccaaatgagtcaaattatgga 252  Q
    |||| |||||| |||| ||||||||||||||||||| ||||||||||  ||  || |||| | ||  | ||| ||||||||| |||||||||||||||||    
T  1403306 acctcataaaagtcaagattttgaagcttagggcaatggtagagcacttgtacaattatatcacagttatagttgagcaccagatgagtcaaattatgga 1403207  T
Q  253 atgtagga 260  Q
    ||||||||    
T  1403206 atgtagga 1403199  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 150 - 260
Target Start/End: Complemental strand, 821195 - 821085
Alignment:
Q  150 caaacctgataaaattcaatattttgaagcttagggcaaaggtagagcacacgttgaactataccccaactgtagctgagcaccaaatgagtcaaattat 249  Q
    ||||||||||||| ||||| ||||||||||||||||||| ||| |||||| | |  |||||||  ||||   ||| || |||||||||| ||||||||||    
T  821195 caaacctgataaagttcaagattttgaagcttagggcaatggtggagcacccatacaactatattccaatcatagttgtgcaccaaatgggtcaaattat 821096  T
Q  250 ggaatgtagga 260  Q
    | |||||||||    
T  821095 gaaatgtagga 821085  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 277 - 355
Target Start/End: Original strand, 974971 - 975049
Alignment:
Q  277 atagttttatgcgtagaaactccacatttgaaagtgctttcatcggaacatcgcaattacattcaataatatctgctct 355  Q
    |||||||||||||||||||||||| ||||||||||| ||||| ||||| || ||| | ||| ||| |||||||||||||    
T  974971 atagttttatgcgtagaaactccaaatttgaaagtgatttcaccggaaaatagcattcacagtcagtaatatctgctct 975049  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 150 - 259
Target Start/End: Complemental strand, 410301 - 410192
Alignment:
Q  150 caaacctgataaaattcaatattttgaagcttagggcaaaggtagagcacacgttgaactataccccaactgtagctgagcaccaaatgagtcaaattat 249  Q
    |||||| |||||| ||||| ||||||||||||||||||| ||| ||||||  ||  ||||||| |||    |||| ||| |||||||||  |||||||||    
T  410301 caaacccgataaagttcaagattttgaagcttagggcaatggtggagcacttgtacaactatatccccgtcgtagttgatcaccaaatggatcaaattat 410202  T
Q  250 ggaatgtagg 259  Q
    ||||||||||    
T  410201 ggaatgtagg 410192  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 355
Target Start/End: Complemental strand, 409865 - 409787
Alignment:
Q  277 atagttttatgcgtagaaactccacatttgaaagtgctttcatcggaacatcgcaattacattcaataatatctgctct 355  Q
    |||||| ||| ||||||||||||| ||||||||| | ||||||||||| |  ||||| ||| || ||||||||||||||    
T  409865 atagttgtatacgtagaaactccaaatttgaaagcgatttcatcggaaaaatgcaatgacaatcgataatatctgctct 409787  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 1399365 - 1399319
Alignment:
Q  272 cttgtatagttttatgcgtagaaactccacatttgaaagtgctttca 318  Q
    |||| |||||| ||||||||||||||||||||||||||||| |||||    
T  1399365 cttgcatagttgtatgcgtagaaactccacatttgaaagtgatttca 1399319  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 1403060 - 1403014
Alignment:
Q  272 cttgtatagttttatgcgtagaaactccacatttgaaagtgctttca 318  Q
    |||| |||||| ||||||||||||||||||||||||||||| |||||    
T  1403060 cttgcatagttgtatgcgtagaaactccacatttgaaagtgatttca 1403014  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 965484 - 965522
Alignment:
Q  150 caaacctgataaaattcaatattttgaagcttagggcaa 188  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  965484 caaacctgataaagttcaagattttgaagcttagggcaa 965522  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 244
Target Start/End: Original strand, 982099 - 982193
Alignment:
Q  150 caaacctgataaaattcaatattttgaagcttagggcaaaggtagagcacacgttgaactataccccaactgtagctgagcaccaaatgagtcaa 244  Q
    |||||||||||||  |||| |||||||||||||  |||| ||| |||||| |||  |||||||  ||||   ||| |||||||||||||||||||    
T  982099 caaacctgataaaggtcaagattttgaagcttaaagcaatggtggagcactcgtacaactatattccaatcatagttgagcaccaaatgagtcaa 982193  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 333
Target Start/End: Complemental strand, 404611 - 404574
Alignment:
Q  296 ctccacatttgaaagtgctttcatcggaacatcgcaat 333  Q
    ||||||||||||||||||||||||||||| || |||||    
T  404611 ctccacatttgaaagtgctttcatcggaaaatagcaat 404574  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 364
Target Start/End: Complemental strand, 36198931 - 36198844
Alignment:
Q  277 atagttttatgcgtagaaactccacatttgaaagtgctttcatcggaacatcgcaattacattcaataatatctgctctaatcaactt 364  Q
    |||||| ||| | ||||||||||  |||  ||||||||||||| |||| ||| ||||||   ||||||||||||||||||||||||||    
T  36198931 atagttgtattcttagaaactccgaattaaaaagtgctttcattggaatatcacaattaacgtcaataatatctgctctaatcaactt 36198844  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 373
Target Start/End: Original strand, 45810754 - 45810842
Alignment:
Q  285 atgcgtagaaactccacatttgaaagtgctttcatcggaacatcgcaattacattcaataatatctgctctaatcaactttgttaaggt 373  Q
    ||||| |||||||||| ||| ||||||||||||||||||| || ||||| |||   | ||||||| |||||  ||||||| ||||||||    
T  45810754 atgcggagaaactccaaattcgaaagtgctttcatcggaaaatagcaataacagatagtaatatcagctctcttcaacttagttaaggt 45810842  T

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