View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_low_47 (Length: 419)
Name: NF1149_low_47
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 92 - 352
Target Start/End: Original strand, 506400 - 506655
Alignment:
| Q |
92 |
ctattattgctactgaatcagttcatatctttatttgacacagcagagcaggatctaaacttctgattagggaacttccatccatatttgatggatcagc |
191 |
Q |
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| T |
506400 |
ctattattgctactgaatcagttcatatctttatttgacacagca-----ggatctaaacttctgatcagggaacttccatccatatttgatggatcagc |
506494 |
T |
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| Q |
192 |
aagagtgaaggcacatcagaatataaggctacattggcaccaaaggtagtgttggttttgattatattactcagaagggaagaagaaatgattttcctat |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
506495 |
aagagtgaaggcacatcagaatataaggctacattggcaccaaaggtagtgttggttttgattatattactcagaagggaagaagaaatgattttcctat |
506594 |
T |
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| Q |
292 |
cgatattgttagttcaaaacatatatcagatcctccattgcttttgccgccctatgctact |
352 |
Q |
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| T |
506595 |
cgatattgttagttcaaaacatatatcagatcctccattgcttttgctgcccaatgttact |
506655 |
T |
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Target: chr6 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 106 - 298
Target Start/End: Original strand, 47449 - 47643
Alignment:
| Q |
106 |
gaatcagttcatatctttatttgacacagcagagcaggatctaaacttctgattagggaacttccatccatatttgatggatcagcaagagtgaaggcac |
205 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||| |||| |
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| T |
47449 |
gaatcagttcatatctttatttgacaaagcag-----gatctaaacttctgattagggaacttccatccatttttgatggatcagctagagcgaacgcac |
47543 |
T |
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| Q |
206 |
atc----agaatat---aaggctacattggcaccaaaggtagtgttggttttgattatattactcagaagggaagaagaaatgattttcctatcgatatt |
298 |
Q |
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| T |
47544 |
aaccccaagatgattcaaaggctacattggcaccaaaggtagtgttggttttgattatgttactcagaagggaagaagaaatgattttcctattgatatt |
47643 |
T |
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