View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_low_49 (Length: 415)
Name: NF1149_low_49
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 9e-77; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 9124979 - 9125152
Alignment:
| Q |
15 |
tataaagaccgttggaaagatgaacttacaacgactattgaaatctcacatacataaatggaggagtcgggtttgtacccgatcacgatgtccaggataa |
114 |
Q |
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| T |
9124979 |
tataaagaccattggaaagatgaacttgcaacgaatattgaaatctcacatacataaatggaggagccgggtttgtacccgatcacgatgtccagcataa |
9125078 |
T |
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| Q |
115 |
caattttcacattttgtcagtgaaggtaggactaggaaacaaatgtaacctgattaaccaacaaaattcagtta |
188 |
Q |
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| T |
9125079 |
caattttcacattttgtcagtgaaggtaggattaggaaacaaatataacctgattaaccaacaaaattcagtta |
9125152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 268 - 415
Target Start/End: Original strand, 9125628 - 9125775
Alignment:
| Q |
268 |
aaatcataaatccatatatatttgaaaggtcccccaagcacttgaccttgctctatacatttagtaatcaatccatatatattatgtatatattcacata |
367 |
Q |
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| T |
9125628 |
aaatcataaatacatatatatttgaaaggtcccccaagcacttgaccttgctctatacatttggtaatcaatccatatatattatgtatatattcacata |
9125727 |
T |
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| Q |
368 |
atacttccccgtgtcttttcaattttatcggatgtctccgaaaggata |
415 |
Q |
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| T |
9125728 |
atacttccccgtgtcttttcaattttattggatgtctccgaaaggata |
9125775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 9125513 - 9125561
Alignment:
| Q |
185 |
gttattacaatctgagaactgaacaacagacctggatcaacaatacctc |
233 |
Q |
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| T |
9125513 |
gttattacaatctgagaactgaacaacagacctggatcaacaatacctc |
9125561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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