View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_low_55 (Length: 400)
Name: NF1149_low_55
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 30 - 388
Target Start/End: Complemental strand, 37749172 - 37748813
Alignment:
| Q |
30 |
tagcaattctgtatgatgatactctaactatagctcaattttttattacttcatcctttccaattctgtatgatgatactgagtttcttcttgttacagt |
129 |
Q |
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| T |
37749172 |
tagcaattctgtatgatgatactctaactatagctcaattttttattacttcatcctttccaattctgtatgatgatactgagtttcttcttgttacagt |
37749073 |
T |
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| Q |
130 |
ttgcttgacaacaatgaactccttattggtttctcccccaaaatcaatgaactgaagatgctttcggagtatcaagtagataaaaatcagttaatcaatg |
229 |
Q |
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| T |
37749072 |
ttgcttgacaacaatgaactccttattggtttctcccccaaaatcaatgaactgaagatgctttcggagtatcaagtagataaaaatcagttaatcaatg |
37748973 |
T |
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| Q |
230 |
cagataagatgtcatcttgttctgaaagatccatcacatggtatgttactaataaactgtaaggtttttcacatttttatcatacac-ttttttcctata |
328 |
Q |
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| T |
37748972 |
cagataagatgtcatcttgttctgaaagatccatcacatggtatgttactaataaactgtaaggtttttcacatttttatcatgcactttttttcctata |
37748873 |
T |
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| Q |
329 |
gtctaagttgtgtccattttatgcctattataaggcatgttcatgaaaatgaaggtccta |
388 |
Q |
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| T |
37748872 |
gtctaagttgtgtccattttatgcctattataaggcatgttcatgaaaatgaaggtccta |
37748813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 279
Target Start/End: Original strand, 35608773 - 35608849
Alignment:
| Q |
205 |
gtagataaaaatcagttaatcaatgcagataa--gatgtcatcttgttctgaaagatccatcacatggtatgttact |
279 |
Q |
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| T |
35608773 |
gtagatgaaaaccagttaatcaatgcaactaattgatgcaatcttgttcagaaagatccatcacattgtatgttact |
35608849 |
T |
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