View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_low_56 (Length: 397)
Name: NF1149_low_56
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_56 |
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Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 34820057 - 34819663
Alignment:
| Q |
1 |
ggaacgagaataaatgtgtttagtgtaaaaccaataagacgatctaagtctgaatcagaaatctttgctggaagttttattgacgagagtatcaccaaaa |
100 |
Q |
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|||| |||| ||||||||||||||| |||| |||| ||| |||| |||||||||||||||||||| ||||| |||||| ||||||||||||||||||||| |
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| T |
34820057 |
ggaatgagactaaatgtgtttagtgcaaaagcaattagaagatccaagtctgaatcagaaatcttggctgggagttttgttgacgagagtatcaccaaaa |
34819958 |
T |
|
| Q |
101 |
atgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgctgaggcatgtcctttaaagaagaaagggaagagttatgaaggcga |
200 |
Q |
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|||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
34819957 |
atgatgatggtacgtatgcggtggttttgcaagctaagattgaccatcaactcgttgaggcatgtcctttaaagaagaaagggaagagtgataaaggcga |
34819858 |
T |
|
| Q |
201 |
ggccaacaagaagaaggtcgagtgcgttcttgaggttgagatcggcggctccttgtggaacaggaacttcgatcgtgctggcttcgtgaaggatcatttc |
300 |
Q |
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| T |
34819857 |
ggccaacaagaagaatgtcgagtgcgttcttgaggttgagatcggcggctccttgtggaacaggaacttcgatcgtgctggcttcgtgaaggatcatttc |
34819758 |
T |
|
| Q |
301 |
aacctttatgaagattttgacgtaacaaggaagtctaatcactccaatatgtttcatgatgctagtgtttcttgtttgcgctctgtggtgctgct |
395 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34819757 |
aacctttatgaagattttgaggcaacaaggaagtctaatcactccaatatgtttcatgatgctagtgtttcttgtttgcgctctgtggtgttgct |
34819663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 73 - 215
Target Start/End: Complemental strand, 34820261 - 34820119
Alignment:
| Q |
73 |
agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgctgaggcatgtcctttaa |
172 |
Q |
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|||||| |||||||||| ||||| |||||| ||||||||| || ||||| |||| ||||| || |||||||||||||||||||||| | |||||||| |
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| T |
34820261 |
agttttgttgacgagagcatcacaaaaaataatgttggtacgtcataggtgactttggaagctgaggttgaccatcaactcgctgaggcgtctcctttaa |
34820162 |
T |
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| Q |
173 |
agaagaaagggaagagttatgaaggcgaggccaacaagaagaa |
215 |
Q |
| |
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||||||||||||||||| || |||||||| | | ||||||||| |
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| T |
34820161 |
agaagaaagggaagagtgataaaggcgagacaaccaagaagaa |
34820119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 155
Target Start/End: Complemental strand, 34820612 - 34820530
Alignment:
| Q |
73 |
agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgc |
155 |
Q |
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|||||| ||||||| |||||||| |||| |||||| ||||||| |||||||||||| ||| | || |||||||||| ||||| |
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| T |
34820612 |
agttttgttgacgaaagtatcactaaaattgatgtcggtatgtcggaggtggttttggaagttgagcttgaccatcagctcgc |
34820530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 34820377 - 34820296
Alignment:
| Q |
74 |
gttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgc |
155 |
Q |
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||||| |||||||||||||||| ||||||||| |||||| || ||||||| |||| ||| | | |||||||||||||||| |
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| T |
34820377 |
gttttgttgacgagagtatcacaaaaaatgattttggtacgtcagaggtggctttggaagttgtggttgaccatcaactcgc |
34820296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 149
Target Start/End: Complemental strand, 34820729 - 34820653
Alignment:
| Q |
73 |
agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatca |
149 |
Q |
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|||||| |||||||||||||||| ||||||||| |||||| || ||||||| |||| ||||| || || ||||||| |
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| T |
34820729 |
agttttgttgacgagagtatcacaaaaaatgatattggtacgtcagaggtggctttggaagctgaggttaaccatca |
34820653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 112
Target Start/End: Complemental strand, 34820846 - 34820807
Alignment:
| Q |
73 |
agttttattgacgagagtatcaccaaaaatgatgttggta |
112 |
Q |
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|||||| |||||||||||||||| |||||||||||||||| |
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| T |
34820846 |
agttttgttgacgagagtatcacaaaaaatgatgttggta |
34820807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 155
Target Start/End: Complemental strand, 34820495 - 34820413
Alignment:
| Q |
73 |
agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgc |
155 |
Q |
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|||||| ||||||||||| ||| |||||||||||||||| | |||||||||||| ||| | || |||||||||| ||||| |
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| T |
34820495 |
agttttgttgacgagagtgtcataaaaaatgatgttggtacatcagaggtggttttgaaagttgaggttgaccatcagctcgc |
34820413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 341
Target Start/End: Complemental strand, 22080743 - 22080680
Alignment:
| Q |
278 |
ctggcttcgtgaaggatcatttcaacctttatgaagattttgacgtaacaaggaagtctaatca |
341 |
Q |
| |
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||||||||||||| ||||||||||||||| ||| |||||||| | | | |||||||||||||| |
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| T |
22080743 |
ctggcttcgtgaaagatcatttcaaccttcctgaggattttgaggcagcgaggaagtctaatca |
22080680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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