View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1149_low_57 (Length: 397)
Name: NF1149_low_57
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_57 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 41 - 397
Target Start/End: Original strand, 37614368 - 37614724
Alignment:
| Q |
41 |
aatcaaaggtatacaatggagatgaaatctgccaagcaaagtccaaggaacttctcttggaaataaacctaccaaatggtcttttacctttgaaggacat |
140 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37614368 |
aatcagaggtatacaatggagatgaaatctgccaagcaaagtccaaggaacttctcttggaaataaacctaccaaatggtcttttacctttgaaggacat |
37614467 |
T |
|
| Q |
141 |
tgaagaatgtggttatcatagggagagtggttttgtttggcttaagcagaaagcaagttatactcacaagtttgagaaagttgataggcttgtgacctat |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37614468 |
tgaagaatgtggttatcatagggagagtggttttgtttggcttaagcagaaagcaagctatactcacaagtttgagaaagttgataggcttgtgacctat |
37614567 |
T |
|
| Q |
241 |
ggtactgaagtcactgccactgttgaggttggtaagatcaagaagctaactggtgtgaaggtgaaggaactcttggtttggcttccactgcatgaaatcc |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37614568 |
ggtactgaagtcactgccactgttgaggttggtaagatcaagaagctaactggtgtgaaggtgaaggaactcttggtttggcttccactgcatgaaatcc |
37614667 |
T |
|
| Q |
341 |
agttggatgatccaccaactggtaaaatcactttcagggccattactggacttttca |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37614668 |
agttggatgatccaccaactggtaaaatcactttcagggccattactggacttttca |
37614724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 376
Target Start/End: Complemental strand, 41716584 - 41716554
Alignment:
| Q |
346 |
gatgatccaccaactggtaaaatcactttca |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
41716584 |
gatgatccaccaactggtaaaatcactttca |
41716554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 376
Target Start/End: Complemental strand, 45981999 - 45981969
Alignment:
| Q |
346 |
gatgatccaccaactggtaaaatcactttca |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
45981999 |
gatgatccaccaactggtaaaatcactttca |
45981969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University