View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_low_58 (Length: 392)
Name: NF1149_low_58
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 29656788 - 29656439
Alignment:
| Q |
1 |
ctgagatatctaactgttcattaatttctaccctttaccaagcgtattgatactttagcctcaccataataaatttaccgttgagaaaacacggatgtct |
100 |
Q |
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| T |
29656788 |
ctgagatatctaactgttcattaatttctaccctttaccaagcgtattgatactttagcctcaccataataaatttacggttgagaaaacacggatgtct |
29656689 |
T |
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| Q |
101 |
agtttgtaccaagaaatttacactataaactttttcnnnnnnnnnnnnctacactagaaactac-aagtatgtagagaaagggaaatgatagaatgaggg |
199 |
Q |
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||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
29656688 |
agtttgtaccaagaaatttacactagaaactttt--aaaaaaaaaaaactacactagaaactaccaagtatgtagagaaagggaaatgatagaa-----g |
29656596 |
T |
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| Q |
200 |
tcattgaaatactattctgctagaagctgcttataagagagaagtaaaatggaaattagagcatat----tacgtcaaagaatgctctagactagacata |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29656595 |
tcattgaaatactattctgctagaagctgcttataagagaaaagtaaaatggaaattagagcatataaattacgtcaaagaatgctctagactagacata |
29656496 |
T |
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| Q |
296 |
tatagccaatgaaaataacccattaatgaagatggtgtatccatttaggttgatctg |
352 |
Q |
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|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
29656495 |
tatagccaatgaaaataaccgattaacgaagatggtgtatccatttaggttgatctg |
29656439 |
T |
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