View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1149_low_6 (Length: 700)

Name: NF1149_low_6
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1149_low_6
NF1149_low_6
[»] chr1 (19 HSPs)
chr1 (30-446)||(31063731-31064152)
chr1 (441-699)||(31062820-31063079)
chr1 (73-293)||(33380862-33381083)
chr1 (31-290)||(27761739-27761996)
chr1 (31-290)||(12906091-12906349)
chr1 (31-285)||(36724650-36724904)
chr1 (31-293)||(23193122-23193384)
chr1 (73-288)||(24159740-24159954)
chr1 (31-290)||(2493719-2493976)
chr1 (31-283)||(32987185-32987437)
chr1 (74-181)||(28858005-28858112)
chr1 (41-208)||(25661732-25661899)
chr1 (118-237)||(19798998-19799118)
chr1 (132-212)||(12260010-12260091)
chr1 (260-290)||(28858159-28858189)
chr1 (132-212)||(23192817-23192898)
chr1 (132-208)||(33301180-33301257)
chr1 (132-212)||(47451225-47451306)
chr1 (132-212)||(47455386-47455467)
[»] chr3 (25 HSPs)
chr3 (31-293)||(48435727-48435988)
chr3 (41-290)||(16982930-16983180)
chr3 (41-284)||(12156390-12156633)
chr3 (106-290)||(48432346-48432529)
chr3 (125-290)||(4662120-4662286)
chr3 (73-262)||(21100029-21100217)
chr3 (118-212)||(3672598-3672694)
chr3 (118-212)||(3692630-3692726)
chr3 (31-113)||(48432200-48432282)
chr3 (132-212)||(18467237-18467318)
chr3 (153-218)||(3657261-3657327)
chr3 (132-212)||(758368-758449)
chr3 (132-212)||(12965873-12965954)
chr3 (132-212)||(23666123-23666204)
chr3 (132-212)||(24038371-24038452)
chr3 (132-212)||(39775728-39775809)
chr3 (132-212)||(55431327-55431408)
chr3 (118-207)||(32474665-32474756)
chr3 (152-212)||(3033656-3033717)
chr3 (132-212)||(7571218-7571299)
chr3 (132-212)||(8069692-8069772)
chr3 (132-212)||(8883182-8883263)
chr3 (132-212)||(12112641-12112722)
chr3 (41-114)||(28243431-28243504)
chr3 (132-208)||(49971424-49971501)
[»] chr4 (19 HSPs)
chr4 (73-290)||(33722861-33723077)
chr4 (73-278)||(20513055-20513260)
chr4 (73-290)||(15020407-15020625)
chr4 (31-290)||(55081602-55081854)
chr4 (73-290)||(16595881-16596094)
chr4 (52-287)||(40684752-40684986)
chr4 (50-263)||(2575174-2575387)
chr4 (41-281)||(39991787-39992027)
chr4 (132-212)||(51697931-51698012)
chr4 (159-237)||(12878229-12878307)
chr4 (118-212)||(31273535-31273631)
chr4 (118-212)||(37259862-37259958)
chr4 (167-237)||(1151334-1151403)
chr4 (132-212)||(5271419-5271500)
chr4 (132-212)||(13521992-13522073)
chr4 (132-209)||(31765903-31765981)
chr4 (120-212)||(37264551-37264645)
chr4 (132-212)||(31269048-31269129)
chr4 (132-212)||(47244262-47244343)
[»] chr6 (19 HSPs)
chr6 (31-290)||(35129566-35129824)
chr6 (31-288)||(32814962-32815220)
chr6 (53-290)||(14041627-14041863)
chr6 (31-182)||(14775629-14775779)
chr6 (131-269)||(32551518-32551655)
chr6 (227-290)||(7499228-7499291)
chr6 (132-212)||(24589164-24589245)
chr6 (73-190)||(29610857-29610974)
chr6 (132-212)||(2700106-2700187)
chr6 (132-212)||(21309045-21309126)
chr6 (132-212)||(33687603-33687684)
chr6 (132-206)||(17964559-17964634)
chr6 (132-237)||(6407860-6407965)
chr6 (132-209)||(12688988-12689066)
chr6 (201-290)||(14775534-14775623)
chr6 (118-206)||(16836141-16836231)
chr6 (132-212)||(11570749-11570830)
chr6 (132-208)||(11614092-11614169)
chr6 (261-290)||(29610986-29611015)
[»] chr2 (19 HSPs)
chr2 (31-290)||(44957336-44957595)
chr2 (41-290)||(14104528-14104776)
chr2 (196-290)||(13060433-13060526)
chr2 (89-290)||(41558978-41559178)
chr2 (118-212)||(9180709-9180805)
chr2 (118-212)||(18344445-18344541)
chr2 (118-210)||(9189788-9189882)
chr2 (132-212)||(12796939-12797020)
chr2 (132-212)||(30658277-30658358)
chr2 (118-212)||(25478282-25478378)
chr2 (132-212)||(1934993-1935074)
chr2 (132-212)||(10160724-10160805)
chr2 (132-212)||(19892466-19892547)
chr2 (132-212)||(31326753-31326834)
chr2 (118-212)||(25497310-25497406)
chr2 (118-212)||(30650943-30651039)
chr2 (134-212)||(29677395-29677474)
chr2 (151-212)||(28603312-28603374)
chr2 (132-212)||(35601936-35602017)
[»] chr8 (23 HSPs)
chr8 (31-287)||(19954211-19954468)
chr8 (102-290)||(4544221-4544410)
chr8 (31-290)||(2469910-2470170)
chr8 (73-284)||(19949760-19949972)
chr8 (50-290)||(34517179-34517417)
chr8 (73-245)||(7145797-7145969)
chr8 (127-290)||(20072034-20072196)
chr8 (50-140)||(30778954-30779044)
chr8 (192-290)||(30777026-30777123)
chr8 (137-237)||(28564826-28564926)
chr8 (137-237)||(28572449-28572549)
chr8 (151-209)||(2355478-2355537)
chr8 (96-179)||(28237840-28237923)
chr8 (132-212)||(31449866-31449947)
chr8 (134-237)||(1807462-1807565)
chr8 (118-212)||(34118480-34118576)
chr8 (118-212)||(40125870-40125966)
chr8 (151-212)||(1910988-1911050)
chr8 (132-212)||(15875668-15875749)
chr8 (132-208)||(17793471-17793548)
chr8 (132-212)||(19166648-19166729)
chr8 (132-212)||(44925923-44926004)
chr8 (118-208)||(33416565-33416657)
[»] chr7 (14 HSPs)
chr7 (41-290)||(6898266-6898514)
chr7 (31-290)||(29478054-29478314)
chr7 (45-290)||(23616295-23616544)
chr7 (152-274)||(1289353-1289474)
chr7 (41-163)||(25832272-25832394)
chr7 (50-140)||(20130251-20130341)
chr7 (132-237)||(44423137-44423242)
chr7 (132-212)||(4579522-4579603)
chr7 (132-212)||(9650967-9651048)
chr7 (132-212)||(23866082-23866163)
chr7 (132-210)||(44510677-44510756)
chr7 (132-212)||(23246933-23247014)
chr7 (132-212)||(26341213-26341294)
chr7 (172-212)||(15642248-15642288)
[»] chr5 (21 HSPs)
chr5 (31-290)||(18265404-18265664)
chr5 (31-290)||(1286165-1286422)
chr5 (132-210)||(41587160-41587239)
chr5 (107-250)||(25215203-25215344)
chr5 (107-250)||(25279354-25279495)
chr5 (118-212)||(36937496-36937592)
chr5 (118-212)||(36942250-36942346)
chr5 (118-237)||(6155404-6155524)
chr5 (132-212)||(7451772-7451853)
chr5 (132-212)||(12103039-12103120)
chr5 (132-212)||(26667286-26667367)
chr5 (132-212)||(26938883-26938964)
chr5 (132-212)||(29167973-29168054)
chr5 (132-212)||(35679875-35679956)
chr5 (132-212)||(37652830-37652911)
chr5 (118-212)||(12501884-12501980)
chr5 (118-212)||(42001448-42001544)
chr5 (132-212)||(556709-556790)
chr5 (132-212)||(561481-561562)
chr5 (132-212)||(32461549-32461630)
chr5 (132-212)||(39523063-39523144)
[»] scaffold0018 (1 HSPs)
scaffold0018 (73-285)||(171657-171869)
[»] scaffold0182 (1 HSPs)
scaffold0182 (118-212)||(9872-9968)
[»] scaffold0057 (1 HSPs)
scaffold0057 (132-211)||(35649-35729)
[»] scaffold0352 (1 HSPs)
scaffold0352 (132-212)||(7118-7199)
[»] scaffold0002 (1 HSPs)
scaffold0002 (118-212)||(4088-4184)


Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 30 - 446
Target Start/End: Complemental strand, 31064152 - 31063731
Alignment:
Q  30 ctatcaatgcaatattagaatggtcttagcaccatactttgaagtgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgg 129  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31064152 ctatcaatgcaatattagaatggtcttagcaccatattttgaagtgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgg 31064053  T
Q  130 gctgttttatcctggggacgtcgtggttaatagtctgcttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcag 229  Q
    |||||||||||||||| ||||||||||| ||||| |||||||||||||||| |||||| || ||||| ||||||||||||||| ||| | | ||||||||    
T  31064052 gctgttttatcctggg-acgtcgtggttgatagtttgcttgaacaattttggaaagtgccacgaaacctcttaaagagagcgacctagtccacgactcag 31063954  T
Q  230 cctagtaatctcttcggtgacaagaaatattttttaactaattttgactattgttccaacatatgttagatctacttttgaatacttctttatttattta 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31063953 cctagtaatctcttcggtgacaagaaatattttttaactaattttgactattgttccaacatatgttagatctacttttgaatacttctttattttttta 31063854  T
Q  330 ------nnnnnnnacaaaaccgcttctttttcaatgattcttaaaataaaaatcatctcaaagatcgtagctgcgagcgatttgaaaggtcataacacaa 423  Q
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31063853 ttttttattttttacaaaaccgcttctttttcaatgattcttaaaataaaaatcatctcaaagatcgtagctgcgagcgatttgaaaggtcataacacaa 31063754  T
Q  424 tcaaatatggtttgcttgtgttt 446  Q
    |||||||||| ||||||||||||    
T  31063753 tcaaatatgggttgcttgtgttt 31063731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 441 - 699
Target Start/End: Complemental strand, 31063079 - 31062820
Alignment:
Q  441 gtgtttaatgtcaccttttgatagcatcttttgttaaaatagttgttaaatgtgacaattagacaacattttctccttctaggtggtgccttatgtcatc 540  Q
    |||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  31063079 gtgtttaatgtcacctttagatagcttctttttttaaaatcgttgttaaatgtgacaattagacaacattttctccttttaggtggtaccttatgtcatc 31062980  T
Q  541 aattaatagataacactttctatttgtaagggttgttatgttacatgtcagccttagcgagggatttatttaaccaatagataacacttttttgatacaa 640  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  31062979 aattaatagataacactttctatttgtaagggttgttatgttacatgtcagccttagcgagggatgtatttaaccaatagataacact-ttttgatacaa 31062881  T
Q  641 --gtagtcaaatgtcgctgctaaaacataattttcatatttgtttatattattcgacatcc 699  Q
      |  |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  31062880 gcgctgtcaaatgtcgctgctaaaacataattttcatatttgtttattttattcaacatcc 31062820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 73 - 293
Target Start/End: Original strand, 33380862 - 33381083
Alignment:
Q  73 gtgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgggctgttttatcctggggacgtcgtggttaatagtctgcttgaa 172  Q
    ||||||||| ||||||||||||||||||||||| ||||||| || |||||| |||||||||||||||| |||||||||||||||| |||||||||||| |    
T  33380862 gtgtatttctagaacagatcctatagtgcaatatgactctggtacagttgtagctgggctgttttatcttggggacgtcgtggttgatagtctgcttgca 33380961  T
Q  173 caattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcagcctagtaatctcttcggtgacaagaaatat-tttttaactaat 271  Q
    |||||||||  ||||||| ||||||||||||||||||||| ||| ||| ||||||||||||||||||| ||| |||| || ||| || ||||||||||||    
T  33380962 caattttgagcagtgtcacgaaacgtcttaaagagagcgacctagtacacgactcagcctagtaatcttttctgtgataaaaaaaatatttttaactaat 33381061  T
Q  272 tttgactattgttccaacatat 293  Q
    ||||||||||||||||||||||    
T  33381062 tttgactattgttccaacatat 33381083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 31 - 290
Target Start/End: Original strand, 27761739 - 27761996
Alignment:
Q  31 tatcaatgcaatattagaatggtcttagcaccatactttgaagtgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctggg 130  Q
    ||||||| | ||||| ||||||||||||||||||| |   | ||||||||| ||||||||||||||||||||||| | |||||||| | |||| |||||     
T  27761739 tatcaataccatattggaatggtcttagcaccatattgaaaggtgtatttctagaacagatcctatagtgcaatatg-ctctgatacaattgtagctgga 27761837  T
Q  131 ctgttttatcctggggacgtcgtggttaatagtctgcttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcagc 230  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||| | |||| || ||||||| |||||||||| || ||| |  |||||||| |    
T  27761838 ctgttttatcctggggacgtcgtggttgatagtctgcttgcacaattttggacagtgccacgaaacgttttaaagagagtgacctagtctgcgactcaac 27761937  T
Q  231 ctagtaatctcttcggtgacaagaaatattttttaactaattttgactattgttccaaca 290  Q
    |||||||| |||||  |||||| |||||||||||||||||| ||||||||||||||||||    
T  27761938 ctagtaatatcttcaatgacaa-aaatattttttaactaatgttgactattgttccaaca 27761996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 31 - 290
Target Start/End: Complemental strand, 12906349 - 12906091
Alignment:
Q  31 tatcaatgcaatattagaatggtcttagcaccatactttgaag-tgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgg 129  Q
    ||||||| | |||||||| |||||||||||||||| ||||||| |||| ||  |||||| ||||||| |||||||| |||||||||| | ||||  || |    
T  12906349 tatcaataccatattagagtggtcttagcaccata-tttgaaggtgtacttttagaacatatcctattgtgcaataggactctgatacaattgtaacttg 12906251  T
Q  130 gctgttttatcctggggacgtcgtggttaatagtctgcttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcag 229  Q
    ||||||||||||||||| |||||||||| |||||||||||| |||||||||   |||| || ||||||||||||||||||||| ||| | ||||||| ||    
T  12906250 gctgttttatcctgggg-cgtcgtggttgatagtctgcttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacctagttcgcgactaag 12906152  T
Q  230 cctagtaatctcttcggtgacaagaaatattttttaactaa-ttttgactattgttccaaca 290  Q
    |||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||    
T  12906151 cctagtaatctcttcggtaacaa-aaatattttttaactaatttttgactattgttccaaca 12906091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 31 - 285
Target Start/End: Complemental strand, 36724904 - 36724650
Alignment:
Q  31 tatcaatgcaatattagaatggtcttagcaccatactttgaag-tgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgg 129  Q
    ||||||| | |||||||| |||||||||||||||| ||||||| |||||||| |||||| |||||||| ||||||| |||| ||||| | || | |||||    
T  36724904 tatcaataccatattagagtggtcttagcaccata-tttgaaggtgtatttctagaacatatcctataatgcaataggactttgatacaattatagctgg 36724806  T
Q  130 gctgttttatcctggggacgtcgtggttaatagtctgcttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcag 229  Q
    ||||||||||| ||||| |||||||||| || ||||||||| |||||||||   |||| ||| |||||||||||||||||||| ||| | |  |||||||    
T  36724805 gctgttttatcttgggggcgtcgtggttgattgtctgcttgcacaattttgggtagtgccataaaacgtcttaaagagagcgacctagtccatgactcag 36724706  T
Q  230 cctagtaatctcttcggtgacaagaaatatttttt-aactaattttgactattgttc 285  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  36724705 cctagtaatctcttcggtgacaa-aaatatttttttaactaattttgactattgttc 36724650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 31 - 293
Target Start/End: Original strand, 23193122 - 23193384
Alignment:
Q  31 tatcaatgcaatattagaatggtcttagcaccatactttgaa-gtgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgg 129  Q
    ||||||| | |||||||| |||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||| |||||| | | | |||| | ||     
T  23193122 tatcaataccatattagagtggtcttagcaccata-tttgaaggtgtatttctagaacagatcctatagtgcaataggactctaagacatttgtagatga 23193220  T
Q  130 gctgttttatcctggggacgtcgtggttaatagtctgcttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcag 229  Q
    | ||||||||| ||||| |||||||||| |||||||||||| | |||||||    ||| |||||||||||||| ||||||||| ||| | ||||||||||    
T  23193221 gttgttttatcatgggggcgtcgtggttgatagtctgcttgcataattttgggttgtgccatgaaacgtcttatagagagcgacctagtccgcgactcag 23193320  T
Q  230 cctagtaatctcttcggtgaca-agaaatattttttaactaattttgactattgttccaacatat 293  Q
    | |||||||||||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||    
T  23193321 cgtagtaatctcttcgatgacagaaaaata-tttttaactaattttgactattgttccaacatat 23193384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 73 - 288
Target Start/End: Original strand, 24159740 - 24159954
Alignment:
Q  73 gtgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgggctgttttatcctggggacgtcgtggttaatagtctgcttgaa 172  Q
    ||||||||| |||||||||| ||||||||||||  ||| ||||| |||||| |||| |||||||||||||||||||||||| ||| |||||||||||| |    
T  24159740 gtgtatttctagaacagatcatatagtgcaatagaactatgatacagttgtagctgagctgttttatcctggggacgtcgtcgttgatagtctgcttgca 24159839  T
Q  173 caattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcagcctagtaatctcttcggtgacaagaaatattttttaactaatt 272  Q
    ||||||||   ||| | | ||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||| |  ||||| |||||||||||||    
T  24159840 caattttgggcagtattacgaaacgtcttaaagagagcgacctagtccgcgactcagcctagtaatctcttcggtgatagaaaata-tttttaactaatt 24159938  T
Q  273 ttgactattgttccaa 288  Q
    ||||||||| ||||||    
T  24159939 ttgactattattccaa 24159954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 31 - 290
Target Start/End: Original strand, 2493719 - 2493976
Alignment:
Q  31 tatcaatgcaatattagaatggtcttagcaccatactttgaa-gtgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgg 129  Q
    ||||||| | ||||||||||||||||||||||||| |||||| ||||||||| |||||||| |||||||||||||| || |  ||||   |||| ||||     
T  2493719 tatcaataccatattagaatggtcttagcaccata-tttgaatgtgtatttctagaacagaccctatagtgcaataggatt--gatacgattgtagctga 2493815  T
Q  130 gctgttttatcctggggacgtcgtggttaatagtctgcttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcag 229  Q
    | ||||||||||||||| || ||||||| ||||| |||||| |||||||||   |||| || ||||||||||||||||||||| ||| |  ||||||||     
T  2493816 gttgttttatcctgggggcgccgtggttgatagtttgcttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacctagtttgcgactcaa 2493915  T
Q  230 cctagtaatctcttcggtgaca-agaaatattttttaactaattttgactattgttccaaca 290  Q
    ||||||||||||||||||  || | ||||| ||||||||||||||||| |||||||||||||    
T  2493916 cctagtaatctcttcggttgcagataaata-tttttaactaattttgattattgttccaaca 2493976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 31 - 283
Target Start/End: Complemental strand, 32987437 - 32987185
Alignment:
Q  31 tatcaatgcaatattagaatggtcttagcaccatactttgaag-tgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgg 129  Q
    ||||||| | ||||| || || |||||||||||||  |||||| |||||||| | || ||||| |||||||||||| |||||||||| | |||| | |||    
T  32987437 tatcaataccatattggagtgatcttagcaccatatattgaagatgtatttctaaaagagatcatatagtgcaataggactctgatacaattgtagttgg 32987338  T
Q  130 gctgttttatcctggggacgtcgtggttaatagtctgcttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcag 229  Q
     ||||||| |||| ||| |||| || || |||||||||||| ||||||||    |||| ||  |||| |||||||||||| || ||| | ||||||||||    
T  32987337 actgttttctcctaggggcgtcatgattgatagtctgcttgcacaattttaggcagtgccacaaaacatcttaaagagagtgacctagtccgcgactcag 32987238  T
Q  230 cctagtaatctcttcggtgacaagaaatattttttaactaattttgactattgt 283  Q
    | |||||||||||||| |||||| || || ||||||||||||||||||||||||    
T  32987237 cttagtaatctcttcgatgacaaaaacta-tttttaactaattttgactattgt 32987185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 74 - 181
Target Start/End: Original strand, 28858005 - 28858112
Alignment:
Q  74 tgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgggctgttttatcctggggacgtcgtggttaatagtctgcttgaac 173  Q
    |||||||| ||| ||||||||||||||||||| |||| ||||| |||| | |||| ||| |||||||||||||||||||||||| |||||||||||| ||    
T  28858005 tgtatttctagagcagatcctatagtgcaataggactttgatacagttttagctgagctattttatcctggggacgtcgtggttgatagtctgcttgcac 28858104  T
Q  174 aattttga 181  Q
    ||||||||    
T  28858105 aattttga 28858112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 41 - 208
Target Start/End: Original strand, 25661732 - 25661899
Alignment:
Q  41 atattagaatggtcttagcaccatactttgaag-tgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgggctgttttat 139  Q
    ||||| || |||||||||| ||||| ||||||| |||||||| |||||| |||||||||||||||| |||||||||| | |||| |||| ||||||||||    
T  25661732 atattggagtggtcttagccccata-tttgaaggtgtatttctagaacatatcctatagtgcaataggactctgatacaattgtagctgagctgttttat 25661830  T
Q  140 cctggggacgtcgtggttaatagtctgcttgaacaattttgaaaagtgtcatgaaacgtcttaaagaga 208  Q
    |||  || |||| ||||| ||||||| |||| |||||||||   |||| ||  ||||||||||||||||    
T  25661831 cctaagggcgtcatggttgatagtctacttgcacaattttgggtagtgccacaaaacgtcttaaagaga 25661899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 237
Target Start/End: Original strand, 19798998 - 19799118
Alignment:
Q  118 agttgttgctgggct-gttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaact 215  Q
    |||||| |||||||| |||||||||||| | || ||||||| |||||||| |||| ||||||||| | |||| || ||||||||||||||||||||| ||    
T  19798998 agttgtagctgggcttgttttatcctggaggcggcgtggttgatagtctgtcttgcacaattttggatagtgccacgaaacgtcttaaagagagcgatct 19799097  T
Q  216 aatacgcgactcagcctagtaa 237  Q
     || || |||||| ||||||||    
T  19799098 gat-cgtgactcaacctagtaa 19799118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 12260091 - 12260010
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    |||||||||||   |||| ||||||| |||||||| |||| |||||||||   ||||||| |||||||||||||||||||||    
T  12260091 tgttttatcctaaagacggcgtggttgatagtctgtcttgcacaattttgggcagtgtcacgaaacgtcttaaagagagcga 12260010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 260 - 290
Target Start/End: Original strand, 28858159 - 28858189
Alignment:
Q  260 tttttaactaattttgactattgttccaaca 290  Q
    |||||||||||||||||||||||||||||||    
T  28858159 tttttaactaattttgactattgttccaaca 28858189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 23192817 - 23192898
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| |  | ||||||| ||||||||| ||| |||||||||   |||| || |||||||||||||||||||||    
T  23192817 tgttttatcctggaggaggcgtggttgatagtctgccttgtacaattttgggcagtgccacgaaacgtcttaaagagagcga 23192898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 33301180 - 33301257
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagaga 208  Q
    ||||||||||||| | || ||||||| |||||||| |||| |||||||||   |||| || |||||||||||||||||    
T  33301180 tgttttatcctggaggcggcgtggttgatagtctgtcttgcacaattttgggcagtgccacgaaacgtcttaaagaga 33301257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 47451225 - 47451306
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||| ||| | || ||||||| |||||||| |||| ||||||||    |||| ||||||||||||||||||||||||    
T  47451225 tgttttatcttggaggcggcgtggttgatagtctgtcttgcacaatttttggcagtgccatgaaacgtcttaaagagagcga 47451306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 47455386 - 47455467
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| ||| |||| |||| ||||||||| | | || || |||||||||||||||||||||    
T  47455386 tgttttatcctggaggcggcgtggttgataatctgtcttgcacaattttggacattgccacgaaacgtcttaaagagagcga 47455467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 140; Significance: 6e-73; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 31 - 293
Target Start/End: Original strand, 48435727 - 48435988
Alignment:
Q  31 tatcaatgcaatattagaatggtcttagcaccatactttgaa-gtgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgg 129  Q
    ||||||| | |||||||| |||||||||||||||| |||||| ||||||||| | |||||||||| || ||||||| |||||||||| | |||| ||||     
T  48435727 tatcaataccatattagagtggtcttagcaccata-tttgaaggtgtatttctaaaacagatcctttaatgcaataggactctgatacaattgtagctga 48435825  T
Q  130 gctgttttatcctggggacgtcgtggttaatagtctgcttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcag 229  Q
    |||||||||||||||||||||||||||| |||||||||||| || |||||||| ||||||| ||||||||||||||||||||| ||| | ||||||||||    
T  48435826 gctgttttatcctggggacgtcgtggttgatagtctgcttgcactattttgaacagtgtcacgaaacgtcttaaagagagcgacctagtccgcgactcag 48435925  T
Q  230 cctagtaatctcttcggtgacaagaaatattttttaactaattttgactattgttccaacatat 293  Q
    |||||||||||||||||||||   ||||| ||||||||||||||||| ||||||||||| ||||    
T  48435926 cctagtaatctcttcggtgacggaaaata-tttttaactaattttgagtattgttccaaaatat 48435988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 41 - 290
Target Start/End: Complemental strand, 16983180 - 16982930
Alignment:
Q  41 atattagaatggtcttagcaccatactttgaag-tgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgggctgttttat 139  Q
    |||||||| |||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||| |||| ||||| |||||| |||||| ||||||||    
T  16983180 atattagagtggtcttagcaccata-tttgaaggtgtatttctagaacagatcctatagtgcaataggactttgatacagttgtagctgggttgttttat 16983082  T
Q  140 cctggggacgtcgtggttaatagtctgcttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcagcctagtaatc 239  Q
    ||||||||| |||||||| ||| ||| |||  ||||||||| | ||||||||||||||||||||| ||||||| ||| | ||||| |||||||| ||||     
T  16983081 cctggggacatcgtggttgatattcttctttcacaattttggacagtgtcatgaaacgtcttaaaaagagcgacctagtccgcgaatcagcctactaata 16982982  T
Q  240 tcttcggtgacaaga-aatattttttaactaattttgactattgttccaaca 290  Q
    ||||||||||||| |  || ||||||||||||||||||||||||||||||||    
T  16982981 tcttcggtgacaaaattattttttttaactaattttgactattgttccaaca 16982930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 41 - 284
Target Start/End: Original strand, 12156390 - 12156633
Alignment:
Q  41 atattagaatggtcttagcaccatactttgaag-tgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgggctgttttat 139  Q
    |||||||| |||||||||||||||| || |||| |||||||| ||| |||||| |||||| ||||| ||||||||||  ||||   |||| |||||||||    
T  12156390 atattagagtggtcttagcaccata-ttagaaggtgtatttctagatcagatcatatagtacaatatgactctgatacggttgcaactggactgttttat 12156488  T
Q  140 cctggggacgtcgtggttaatagtctgcttg---aacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcagcctagta 236  Q
    | |||||||||||||||| ||||||||||||   |||||||||||  ||||||||||||||||||||| ||||  | ||| | |||||| || |||||||    
T  12156489 catggggacgtcgtggttgatagtctgcttgtacaacaattttgagtagtgtcatgaaacgtcttaaa-agagaaatctagtccgcgacacaacctagta 12156587  T
Q  237 atctcttcggtgacaagaaatattttttaactaattttgactattgtt 284  Q
    ||||||| |||||||  || ||||||||||||||||||||||||||||    
T  12156588 atctctttggtgaca--aactattttttaactaattttgactattgtt 12156633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 106 - 290
Target Start/End: Complemental strand, 48432529 - 48432346
Alignment:
Q  106 agactctgatatagttgttgctgggctgttttatcctggggacgtcgtggttaatagtctgcttgaacaattttgaaaagtgtcatgaaacgtcttaaag 205  Q
    ||||||||||| |||||| ||| |||||||||||| |||||||||||||||| |||||||| ||  |||||||||   |||| ||  |||||||||||||    
T  48432529 agactctgatacagttgtagctaggctgttttatcttggggacgtcgtggttgatagtctgttttcacaattttgggcagtgccacaaaacgtcttaaag 48432430  T
Q  206 agagcgaactaatacgcgactcagcctagtaatctcttcggtgacaagaaatattttttaactaattttgactattgttccaaca 290  Q
    ||||||| ||| | ||||||||||||||||||||||||||||||| |||||   ||||||||||||||||||||||||| |||||    
T  48432429 agagcgacctagtccgcgactcagcctagtaatctcttcggtgac-agaaagtatttttaactaattttgactattgttgcaaca 48432346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 125 - 290
Target Start/End: Complemental strand, 4662286 - 4662120
Alignment:
Q  125 gctgggctgttttatcctggggacgtcgtggttaatagtctgcttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcga 224  Q
    ||||| ||||||||||||||||||||| ||||| |||||||||||| | |||||||   | |  ||  |||||||||| ||||||||| ||| | | |||    
T  4662286 gctggactgttttatcctggggacgtcatggttgatagtctgcttgcataattttgggcatttccactaaacgtcttagagagagcgacctagtccacga 4662187  T
Q  225 ctcagcctagtaatctcttcggtgacaagaaatat-tttttaactaattttgactattgttccaaca 290  Q
    |||||| | ||||||||||||||||||| ||| || |||||||||||||||||||||| ||||||||    
T  4662186 ctcagcgtggtaatctcttcggtgacaaaaaaaatatttttaactaattttgactattattccaaca 4662120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 73 - 262
Target Start/End: Complemental strand, 21100217 - 21100029
Alignment:
Q  73 gtgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgggctgttttatcctggggacgtcgtggttaatagtctgcttgaa 172  Q
    ||||||||| |||||||||| || |   || |||||||| |||| | |||| ||| | |||||||||| ||||| |||| |||||||||||||| ||| |    
T  21100217 gtgtatttctagaacagatcttacaacacagtaagactccgatacaattgtagctagactgttttatcttgggggcgtcatggttaatagtctgtttgca 21100118  T
Q  173 caattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcagcctagtaatctcttcggtgacaagaaatatttt 262  Q
    |||||||    | | |||||||| |||||||| | |||||  |||| ||||||||||||||||| ||||||||||||| | |||||||||    
T  21100117 caatttttggcattttcatgaaaagtcttaaa-atagcgacataatccgcgactcagcctagtagtctcttcggtgaccaaaaatatttt 21100029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 118 - 212
Target Start/End: Complemental strand, 3672694 - 3672598
Alignment:
Q  118 agttgttgctgggct-gttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    |||||| |||||||| |||||||||||| | || ||||||| ||||||||| ||| |||||||||   |||| ||||||||||||||||||||||||    
T  3672694 agttgtagctgggcttgttttatcctggaggcggcgtggttgatagtctgccttgcacaattttgggcagtgccatgaaacgtcttaaagagagcga 3672598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 118 - 212
Target Start/End: Complemental strand, 3692726 - 3692630
Alignment:
Q  118 agttgttgctgggct-gttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    |||||| |||||||| |||||||||||| | || ||||||| ||||||||| ||| |||||||||   |||| ||||||||||||||||||||||||    
T  3692726 agttgtagctgggcttgttttatcctggaggcggcgtggttgatagtctgccttgcacaattttgggcagtgccatgaaacgtcttaaagagagcga 3692630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 113
Target Start/End: Original strand, 48432200 - 48432282
Alignment:
Q  31 tatcaatgcaatattagaatggtcttagcaccatactttgaag-tgtatttccagaacagatcctatagtgcaataagactctg 113  Q
    ||||||| | |||||||| |||||||| ||||||| ||||||| |||||||| ||||||||||||| ||||||||| |||||||    
T  48432200 tatcaataccatattagagtggtcttaacaccata-tttgaaggtgtatttctagaacagatcctacagtgcaataggactctg 48432282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 18467318 - 18467237
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || |||||||||||||||| |||| |||||||||   |||| || |||||||||||||||||||||    
T  18467318 tgttttatcctggaggcggcgtggttaatagtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagcga 18467237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 3657261 - 3657327
Alignment:
Q  153 tggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaat 218  Q
    ||||| |||||||| |||| ||||||||||| |||| || ||||||||||||||||||||| |||||    
T  3657261 tggttgatagtctgtcttgcacaattttgaacagtgccacgaaacgtcttaaagagagcgatctaat 3657327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 758368 - 758449
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| ||||||||| ||| |||||||||   |||| || |||||||||||||||||||||    
T  758368 tgttttatcctggaggcggcgtggttgatagtctgccttgcacaattttgggtagtgccacgaaacgtcttaaagagagcga 758449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 12965873 - 12965954
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| |||||||| |||| |||||||||   |||| ||| ||||||||||||||||||||    
T  12965873 tgttttatcctggaggcggcgtggttgatagtctgtcttgcacaattttgggcagtgccataaaacgtcttaaagagagcga 12965954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 23666123 - 23666204
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| ||||||||| ||| |||||||||   |||| || |||||||||||||||||||||    
T  23666123 tgttttatcctggaggcggcgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagcga 23666204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 24038371 - 24038452
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| ||||||||| ||| |||||||||   |||| || |||||||||||||||||||||    
T  24038371 tgttttatcctggaggcggcgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagcga 24038452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 39775728 - 39775809
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| ||||||||| ||| |||||||||   |||| || |||||||||||||||||||||    
T  39775728 tgttttatcctggaggcggcgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagcga 39775809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 55431408 - 55431327
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| ||||||||| ||| | ||||||  | ||||||| |||||||||||||||||||||    
T  55431408 tgttttatcctggaggcggcgtggttgatagtctgccttgcataatttttgacagtgtcacgaaacgtcttaaagagagcga 55431327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 207
Target Start/End: Original strand, 32474665 - 32474756
Alignment:
Q  118 agttgttgctgggct-gttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagag 207  Q
    |||||| |||||||| |||||||||||| |||| ||||||| |||||||| |||| |||||||||   |||| || ||||||||||| ||||    
T  32474665 agttgtagctgggcttgttttatcctggagacggcgtggttgatagtctgtcttgcacaattttgggcagtgccacgaaacgtcttagagag 32474756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 3033717 - 3033656
Alignment:
Q  152 gtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    |||||| ||||||||| ||| |||||||||   |||| ||||||||||||||||||||||||    
T  3033717 gtggttgatagtctgccttgcacaattttgggcagtgccatgaaacgtcttaaagagagcga 3033656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 7571218 - 7571299
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || |||| || |||||||| |||| |||||||||   |||| || |||||||||||||||||||||    
T  7571218 tgttttatcctggaggcggcgtgattgatagtctgtcttgcacaattttgggcagtgccacgaaacgtcttaaagagagcga 7571299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 8069772 - 8069692
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| |||||||| |||| ||||||| || | ||| || |||||||||||||||||||||    
T  8069772 tgttttatcctggaggcggcgtggttgatagtctgtcttgcacaatttggaca-gtgccacgaaacgtcttaaagagagcga 8069692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 8883263 - 8883182
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | |  ||||||| |||||||| |||| |||||||||   |||| || |||||||||||||||||||||    
T  8883263 tgttttatcctggaggcagcgtggttgatagtctgtcttgcacaattttgggcagtgccacgaaacgtcttaaagagagcga 8883182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 12112641 - 12112722
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | ||  |||||| |||||||| |||| |||| |||| | |||| || |||||||||||||||||||||    
T  12112641 tgttttatcctggaggcggtgtggttgatagtctgtcttgcacaactttggacagtgccacgaaacgtcttaaagagagcga 12112722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 28243431 - 28243504
Alignment:
Q  41 atattagaatggtcttagcaccatactttgaagtgtatttccagaacagatcctatagtgcaataagactctga 114  Q
    |||||||| || ||||||||||||| ||  |||||| |||| |||| ||||| ||||||| |||| ||||||||    
T  28243431 atattagagtgatcttagcaccatatttaaaagtgtgtttctagaatagatcttatagtgtaataggactctga 28243504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 49971424 - 49971501
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagaga 208  Q
    ||||||||||||| | || |||| || ||||||||| ||| ||||||||| | |||| || |||||||||||||||||    
T  49971424 tgttttatcctggaggcggcgtgattgatagtctgccttgcacaattttggatagtgccacgaaacgtcttaaagaga 49971501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 138; Significance: 9e-72; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 73 - 290
Target Start/End: Original strand, 33722861 - 33723077
Alignment:
Q  73 gtgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgggctgttttatcctggggacgtcgtggttaatagtctgcttgaa 172  Q
    ||||||||| |||||||||| |||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||  || ||||||||| |    
T  33722861 gtgtatttctagaacagatcttatagtgcaataggactctgatacagttgtagctgggctgttttatcctggggacgtcgtggtcgatggtctgcttgca 33722960  T
Q  173 caattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcagcctagtaatctcttcggtgacaagaaatattttttaactaatt 272  Q
    |||||||| | ||||||| |||||||||||||||||| || ||| | ||||||||||||||||||||||||||||||||  ||||| |||||||||||||    
T  33722961 caattttggacagtgtcacgaaacgtcttaaagagagtgacctagtccgcgactcagcctagtaatctcttcggtgacagaaaata-tttttaactaatt 33723059  T
Q  273 ttgactattgttccaaca 290  Q
    ||||||||||||||||||    
T  33723060 ttgactattgttccaaca 33723077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 73 - 278
Target Start/End: Complemental strand, 20513260 - 20513055
Alignment:
Q  73 gtgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgggctgttttatcctggggacgtcgtggttaatagtctgcttgaa 172  Q
    ||||||||| ||||||||||||||||||||||| |||||||||| |||||| |||| | |||||||||||||| ||||||||||| |||||||||||| |    
T  20513260 gtgtatttctagaacagatcctatagtgcaataggactctgatacagttgtagctgagttgttttatcctgggaacgtcgtggttgatagtctgcttgca 20513161  T
Q  173 caattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcagcctagtaatctcttcggtgaca-agaaatattttttaactaat 271  Q
    |||||||||  |||| || ||||| ||||||||||||||| ||| | | |||||||||||||||||||||||  ||||| | ||||| ||||||||||||    
T  20513160 caattttgagcagtgccacgaaacatcttaaagagagcgacctagtccacgactcagcctagtaatctcttcaatgacagaaaaata-tttttaactaat 20513062  T
Q  272 tttgact 278  Q
    | |||||    
T  20513061 tctgact 20513055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 73 - 290
Target Start/End: Original strand, 15020407 - 15020625
Alignment:
Q  73 gtgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgggctgttttatcctggggacgtcgtggttaatagtctgcttgaa 172  Q
    ||||||||| |||||| ||||||||||||||| ||||||||||| | |||| | || ||||||||||||||||  |||||||||| |||||||| ||| |    
T  15020407 gtgtatttctagaacatatcctatagtgcaatgagactctgatacaattgtagttgtgctgttttatcctgggagcgtcgtggttgatagtctgtttgca 15020506  T
Q  173 caattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcagcctagtaatctcttcggtgacaagaaata-ttttttaactaat 271  Q
    ||||||||  |||||||| ||||||| ||||||||||| | ||| |  |||| |||||||||||  |||||||||||||   |||| |||||||||||||    
T  15020507 caattttgggaagtgtcacgaaacgttttaaagagagcaacctagtctgcgattcagcctagtagactcttcggtgacatacaatatttttttaactaat 15020606  T
Q  272 tttgactattgttccaaca 290  Q
    |||||||||||||||||||    
T  15020607 tttgactattgttccaaca 15020625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 31 - 290
Target Start/End: Original strand, 55081602 - 55081854
Alignment:
Q  31 tatcaatgcaatattagaatggtcttagcaccatactttgaag-tgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgg 129  Q
    ||||||| | ||||| || ||||||||| |||||| || |||| |||||||| ||||||||||||||||| |||||||||||||||| |||||| ||||     
T  55081602 tatcaataccatattggagtggtcttagaaccata-ttggaaggtgtatttctagaacagatcctatagtacaataagactctgatacagttgtagctga 55081700  T
Q  130 gctgttttatcctggggacgtcgtggttaatagtctgcttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcag 229  Q
    |||||||||||||| ||||||| ||||| |||||||||||| ||||||||||  ||||  |  ||||||        |||||| ||||| ||||||||||    
T  55081701 gctgttttatcctgaggacgtcatggttgatagtctgcttgtacaattttgagcagtgctacaaaacgt--------gagcgacctaatccgcgactcag 55081792  T
Q  230 cctagtaatctcttcggtgacaagaaatat-tttttaactaattttgactattgttccaaca 290  Q
    |||  ||||||||||| ||||| |||| || |||||||||||||||||||||||||||||||    
T  55081793 cctgataatctcttcgatgacaggaaaaatatttttaactaattttgactattgttccaaca 55081854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 73 - 290
Target Start/End: Original strand, 16595881 - 16596094
Alignment:
Q  73 gtgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgggctgttttatcctggggacgtcgtggttaatagtctgcttgaa 172  Q
    ||||||||| |||||||||| |||||||||||| || |||       |||| |||| | |||||||||||||||||||||||||| | |||||||||| |    
T  16595881 gtgtatttctagaacagatcttatagtgcaataggattctt------ttgtagctgagttgttttatcctggggacgtcgtggttgacagtctgcttgca 16595974  T
Q  173 caattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcagcctagtaatctcttcggtgacaagaaata--ttttttaactaa 270  Q
    |||||||| | |||| ||  |||||||||||||||||||| ||||| |||||||||||||| |||||||||| ||||||| ||| |   |||||||| ||    
T  16595975 caattttggacagtgccacaaaacgtcttaaagagagcgacctaatccgcgactcagcctaataatctcttcagtgacaaaaaaaaatatttttaaccaa 16596074  T
Q  271 ttttgactattgttccaaca 290  Q
    ||||||||||||||||||||    
T  16596075 ttttgactattgttccaaca 16596094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 52 - 287
Target Start/End: Original strand, 40684752 - 40684986
Alignment:
Q  52 gtcttagcaccatactttgaagtgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgggctgttttatcctggggacgtc 151  Q
    |||||||||||||| ||  | ||||||||  | |||| || |||| ||| |||| |||||||||| |||||| | || | ||||||||||| ||||||||    
T  40684752 gtcttagcaccatatttaaaggtgtatttataaaacaaattctatggtgtaataggactctgatacagttgtaggtgagttgttttatcct-gggacgtc 40684850  T
Q  152 gtggttaatagtctgcttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcagcctagtaatctcttcggtgaca 251  Q
    ||| || |||||||||||| || |||||  | |||  |   |||||||||||| ||||||  ||||| ||| ||||| ||||||||| |||||  |||||    
T  40684851 gtgattgatagtctgcttgcacgattttagacagtaccgcaaaacgtcttaaaaagagcggcctaatccgcaactcaacctagtaatttcttccatgaca 40684950  T
Q  252 -agaaatattttttaactaattttgactattgttcca 287  Q
     | ||||| ||||||||||||||| ||||||||||||    
T  40684951 gaaaaata-tttttaactaattttaactattgttcca 40684986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 50 - 263
Target Start/End: Original strand, 2575174 - 2575387
Alignment:
Q  50 tggtcttagcaccatactttgaag-tgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgggctgttttatcctggggac 148  Q
    ||||||||| |||||| ||||||| |||||||  |||||| || ||||||||||||| ||||| ||||||||||| |||| |||| ||| | || ||||     
T  2575174 tggtcttagtaccata-tttgaaggtgtatttttagaacatattctatagtgcaatatgactcagatatagttgtagctgagctgctttctactagggaa 2575272  T
Q  149 gtcgtggttaatagtctgcttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcagcctagtaatctcttcggtg 248  Q
    ||||||||| ||| |||||||| | ||||||    ||||  |  |||||| ||||||||| ||| ||||| ||  ||||| ||||||||| | |||| ||    
T  2575273 gtcgtggttgatattctgcttgcataattttaggcagtgctacaaaacgtattaaagagaacgacctaattcgtaactcaacctagtaattttttcgatg 2575372  T
Q  249 acaagaaatattttt 263  Q
    |||| ||||||||||    
T  2575373 acaaaaaatattttt 2575387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 41 - 281
Target Start/End: Original strand, 39991787 - 39992027
Alignment:
Q  41 atattagaatggtcttagcaccatactttgaag-tgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgggctgttttat 139  Q
    |||||||| |||||||||||||||| ||||||| | ||| || ||||| ||||||| | |||| ||||||| | ||| |||||| | ||  |||||| ||    
T  39991787 atattagagtggtcttagcaccata-tttgaaggtctatatctagaacggatcctacaatgcagtaagactataatacagttgtagttgtactgttt-at 39991884  T
Q  140 cctggggacgtcgtggttaatagtctgcttgaacaatttt-gaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcagcctagtaat 238  Q
    | ||| | |||||| ||| |||||||| ||| |||||||| |   ||||  |  |||  ||||||||||| | |  ||||| |||||||| |||||||||    
T  39991885 cttggaggcgtcgtagtttatagtctgattgcacaatttttgggtagtgctacaaaatatcttaaagagaacaacttaatatgcgactcaacctagtaat 39991984  T
Q  239 ctcttcggtgacaagaaatattttttaactaattttgactatt 281  Q
    ||||| |||||| | |||||||||| |||||||||| ||||||    
T  39991985 ctctttggtgaccaaaaatatttttgaactaattttaactatt 39992027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 51698012 - 51697931
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| ||||||||| ||| ||||||||||  ||||||||||||||||||||| |||||||    
T  51698012 tgttttatcctggaggcggcgtggttgatagtctgccttgcacaattttgagcagtgtcatgaaacgtcttaaaaagagcga 51697931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 237
Target Start/End: Complemental strand, 12878307 - 12878229
Alignment:
Q  159 atagtctgctt-gaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcagcctagtaa 237  Q
    ||||||||||| | ||||||||||||||||||| ||||||||||||||||||||| || || || |||||| ||||||||    
T  12878307 atagtctgctttgcacaattttgaaaagtgtcacgaaacgtcttaaagagagcgacctgat-cgtgactcaacctagtaa 12878229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 212
Target Start/End: Complemental strand, 31273631 - 31273535
Alignment:
Q  118 agttgttgctgggct-gttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    |||||| |||||||| |||||||||||| | || ||||||| |||||||| |||| |||||||||   |||| || |||||||||||||||||||||    
T  31273631 agttgtagctgggcttgttttatcctggaggcggcgtggttgatagtctgtcttgcacaattttgggcagtgccacgaaacgtcttaaagagagcga 31273535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 212
Target Start/End: Original strand, 37259862 - 37259958
Alignment:
Q  118 agttgttgctgggct-gttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    |||||| |||||||| |||||||||||| | || ||||||| ||||||||| ||| ||||||||||  |||| || ||||||||||||||| |||||    
T  37259862 agttgtagctgggcttgttttatcctggaggcggcgtggttgatagtctgccttgcacaattttgagtagtgccacgaaacgtcttaaagaaagcga 37259958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 1151334 - 1151403
Alignment:
Q  167 cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcagcctagtaa 237  Q
    |||| ||||||||| | |||||||||||||||||||||||||| || || || ||||||||| ||||||||    
T  1151334 cttgcacaattttggatagtgtcatgaaacgtcttaaagagagtgatctgat-cgcgactcaacctagtaa 1151403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 5271419 - 5271500
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| |||||||| |||| |||||||||   |||| || |||||||||||||||||||||    
T  5271419 tgttttatcctggaggcggcgtggttgatagtctgtcttgcacaattttgggcagtgccacgaaacgtcttaaagagagcga 5271500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 13521992 - 13522073
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| |||||||| |||| |||||||||   |||| || |||||||||||||||||||||    
T  13521992 tgttttatcctggaggcggcgtggttgatagtctgtcttgcacaattttgggcagtgccacgaaacgtcttaaagagagcga 13522073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 31765981 - 31765903
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagag 209  Q
    ||||||||||||| | || ||||||| |||||||| |||| |||||||||   |||| || ||||||||||||||||||    
T  31765981 tgttttatcctggaggcggcgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagag 31765903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 120 - 212
Target Start/End: Original strand, 37264551 - 37264645
Alignment:
Q  120 ttgttgctgggct-gttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    |||| |||||||| |||||||||||| | || ||||||| ||||||||| ||| | |||||||   |||| || |||||||||||||||||||||    
T  37264551 ttgtagctgggcttgttttatcctggaggcggcgtggttgatagtctgccttgcataattttgggcagtgccacgaaacgtcttaaagagagcga 37264645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 31269129 - 31269048
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| ||||||||| ||| ||||||||    |||| || |||||||||||||||||||||    
T  31269129 tgttttatcctggaggcggcgtggttgatagtctgccttgcacaattttaggcagtgccacgaaacgtcttaaagagagcga 31269048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 47244343 - 47244262
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| |||||||  ||| || ||||||||| |||| || |||||||||||||||| ||||    
T  47244343 tgttttatcctggaggcggcgtggttgatagtctttcttcaataattttgaacagtgccacgaaacgtcttaaagagggcga 47244262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 5e-64; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 31 - 290
Target Start/End: Complemental strand, 35129824 - 35129566
Alignment:
Q  31 tatcaatgcaatattagaatggtcttagcaccatactttgaag-tgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgg 129  Q
    ||||||| | ||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||| | |||||||||| |||||| |||||    
T  35129824 tatcaataccatattagaatggtcttagcaccata-tttgaaggtgtatttctagaacagatcctatagtgcaaaaggactctgatacagttgtagctgg 35129726  T
Q  130 gctgttttatcctggggacgtcgtggttaatagtctgcttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcag 229  Q
     |||||||||||||  || ||||||||| |||||||||||| |||||||||   |||| |||||||||||||||||||||||| ||| |  |||||||||    
T  35129725 actgttttatcctgatgatgtcgtggttgatagtctgcttgcacaattttgggcagtgccatgaaacgtcttaaagagagcgacctagtctgcgactcag 35129626  T
Q  230 cctagtaatctcttcggtgacaagaaatattttttaactaattttgactattgttccaaca 290  Q
      ||||||||| |||| ||||   ||||| |||||||||||||||||||||||||||||||    
T  35129625 tatagtaatcttttcgatgacggaaaata-tttttaactaattttgactattgttccaaca 35129566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 31 - 288
Target Start/End: Original strand, 32814962 - 32815220
Alignment:
Q  31 tatcaatgcaatattagaatggtcttagcaccatactttgaa-gtgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgg 129  Q
    ||||||| | |||||| | |||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||  ||| ||||| | |||| |||||    
T  32814962 tatcaataccatattatagtggtcttagcaccata-tttgaaggtgtatttctagaacagatcctatagtgcaatagaactttgatacatttgtagctgg 32815060  T
Q  130 gctgttttatcctggggacgtcgtggttaatagtctgcttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcag 229  Q
    |||||||||| ||||||  ||||||||| |||||||||||| |||||||||   |||| |  ||||||||||||||||  ||| ||| | ||||| | ||    
T  32815061 gctgttttatactgggggtgtcgtggttgatagtctgcttgcacaattttgggcagtgccgcgaaacgtcttaaagaggacgacctagtccgcgaataag 32815160  T
Q  230 cctagtaatctcttcggtgacaagaaatat-tttttaactaattttgactattgttccaa 288  Q
    ||||||||||| || | |||||| ||| || ||||||| |||||||||||||||||||||    
T  32815161 cctagtaatctttttgatgacaaaaaaaatatttttaattaattttgactattgttccaa 32815220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 53 - 290
Target Start/End: Complemental strand, 14041863 - 14041627
Alignment:
Q  53 tcttagcaccatactttgaagtgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgggctgttttatcctggggacgtcg 152  Q
    ||||||||||||| ||  | ||||||||| ||||||||||||||||||||||| |||| ||||| ||||||  ||| ||||||||||| ||| | |||||    
T  14041863 tcttagcaccatatttcaaggtgtatttctagaacagatcctatagtgcaataggactttgatacagttgtaactgagctgttttatcttggag-cgtcg 14041765  T
Q  153 tggttaatagtctgcttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcagcctagtaatctcttcggtgacaa 252  Q
    ||||| ||||  ||| || ||||||||    ||||||| ||||||| ||||||||||||| ||||| ||||||| || ||||||||||||||| ||||||    
T  14041764 tggttgatag-atgcatgcacaattttaggcagtgtcacgaaacgttttaaagagagcgacctaatccgcgactaagtctagtaatctcttcgatgacaa 14041666  T
Q  253 gaaatatttttt--aactaattttgactattgttccaaca 290  Q
     || ||||||||  ||||||||||||||||||||||||||    
T  14041665 -aattatttttttaaactaattttgactattgttccaaca 14041627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 31 - 182
Target Start/End: Complemental strand, 14775779 - 14775629
Alignment:
Q  31 tatcaatgcaatattagaatggtcttagcaccatactttgaagtgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctggg 130  Q
    ||||||| | ||||| || |||| ||||||||||| ||  | |||| |||| ||||||||||||||||||||||| |||| ||||| ||| || |||| |    
T  14775779 tatcaataccatattggagtggttttagcaccatatttaaaggtgtctttctagaacagatcctatagtgcaataggactttgatacagtggtagctgag 14775680  T
Q  131 ctgttttatcctggggacgtcgtggttaatagtctgcttgaacaattttgaa 182  Q
    |||||||||||||||| | |||||||| |||||||||||| |||||||||||    
T  14775679 ctgttttatcctgggg-catcgtggttgatagtctgcttgcacaattttgaa 14775629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 131 - 269
Target Start/End: Original strand, 32551518 - 32551655
Alignment:
Q  131 ctgttttatcctggggacgtcgtggttaatagtctgcttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcagc 230  Q
    |||||||||| || || ||| |||||| |||||||||||| ||||||||||| ||| ||| ||||||| ||||| ||||||   |||| | ||||| |||    
T  32551518 ctgttttatcatgagggcgttgtggttgatagtctgcttgcacaattttgaacagtttcacgaaacgtattaaaaagagcggcttaatccacgacttagc 32551617  T
Q  231 ctagtaatctcttcggtgacaagaaatattttttaacta 269  Q
    ||| |||| |||||| ||||  |||||||||||||||||    
T  32551618 ctaataat-tcttcgatgaccggaaatattttttaacta 32551655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 227 - 290
Target Start/End: Original strand, 7499228 - 7499291
Alignment:
Q  227 cagcctagtaatctcttcggtgacaagaaatattttttaactaattttgactattgttccaaca 290  Q
    ||||||||||||||||||| |||||  ||||||||||||||||||||| | |||||||||||||    
T  7499228 cagcctagtaatctcttcgatgacagaaaatattttttaactaattttcattattgttccaaca 7499291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 24589164 - 24589245
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| |||| ||||||| |||||||  |||| ||||||||| ||||||||| ||||||| |||||||||||||    
T  24589164 tgttttatcctggagacggcgtggttgatagtctatcttgcacaattttggaaagtgtcacgaaacgttttaaagagagcga 24589245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 190
Target Start/End: Original strand, 29610857 - 29610974
Alignment:
Q  73 gtgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgggctgttttatcctggggacgtcgtggttaatagtctgcttgaa 172  Q
    ||||||||| | ||| ||||||| |||||| || ||||| || | | | || |||||||| |||||||||| || | |||||||| |||||||||||| |    
T  29610857 gtgtatttctataacggatcctacagtgcagtaggactccgaaacaatcgtagctgggctattttatcctgaggtcatcgtggttgatagtctgcttgca 29610956  T
Q  173 caattttgaaaagtgtca 190  Q
    |||||||||| |||||||    
T  29610957 caattttgaatagtgtca 29610974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 2700106 - 2700187
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    |||||||||||||   || ||||||| |||||||| |||| ||||||||||| |||| || |||||||||||||||||||||    
T  2700106 tgttttatcctggaagcggcgtggttgatagtctgtcttgcacaattttgaacagtgccacgaaacgtcttaaagagagcga 2700187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 21309126 - 21309045
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| ||||||||| ||| |||||||||   |||| ||||||||||||||||||||||||    
T  21309126 tgttttatcctggaggcggcgtggttgatagtctgcattgcacaattttgggcagtgccatgaaacgtcttaaagagagcga 21309045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 33687603 - 33687684
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| |||| | ||||| |||||||| |||| |||||||||   |||| || |||||||||||||||||||||    
T  33687603 tgttttatcctggagacggcatggttgatagtctgtcttgcacaattttggccagtgccacgaaacgtcttaaagagagcga 33687684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 17964559 - 17964634
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaaga 206  Q
    ||||||||||||| | || ||||||| |||||||| |||| ||||||||| | |||| || |||||||||||||||    
T  17964559 tgttttatcctggaggcggcgtggttgatagtctgccttgcacaattttggatagtgccacgaaacgtcttaaaga 17964634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 6407860 - 6407965
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcagc 230  Q
    ||||||||||||| | || ||||||| ||||||||| ||| |||||||||   |||| || |||||||||| |||||||||| || || || |||||| |    
T  6407860 tgttttatcctggaggcggcgtggttgatagtctgctttgtacaattttgggcagtgccacgaaacgtcttcaagagagcgacctgat-cgtgactcaac 6407958  T
Q  231 ctagtaa 237  Q
    |||||||    
T  6407959 ctagtaa 6407965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 12689066 - 12688988
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagag 209  Q
    ||||||||||||| |||| ||||||| |||||||| |||| |||||||||   ||| |||  |||||||||||||||||    
T  12689066 tgttttatcctggagacggcgtggttgatagtctgccttgcacaattttgggcagtatcacaaaacgtcttaaagagag 12688988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 201 - 290
Target Start/End: Complemental strand, 14775623 - 14775534
Alignment:
Q  201 taaagagagcgaactaatacgcgactcagcctagtaatctcttcggtgacaagaaatat-tttttaactaattttgactattgttccaaca 290  Q
    |||||||| ||| ||| | |||||||||||||  |||||||||  || ||| |||| || |||||||||||||||||||||| ||||||||    
T  14775623 taaagagaacgacctattccgcgactcagccttataatctctttagttaca-gaaaaatatttttaactaattttgactattattccaaca 14775534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 118 - 206
Target Start/End: Original strand, 16836141 - 16836231
Alignment:
Q  118 agttgttgctgggct-gttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaaga 206  Q
    |||||| |||||||| |||||||||||| | || ||||||| |||||||| |||| |||||||||   |||| || |||||||||||||||    
T  16836141 agttgtagctgggcttgttttatcctggaggcggcgtggttgatagtctgccttgtacaattttgggcagtgccacgaaacgtcttaaaga 16836231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 11570749 - 11570830
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| || |||||| ||| |||||||||   |||| || |||||||||||||||||||||    
T  11570749 tgttttatcctggaggcggcgtggttgattgtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagcga 11570830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 11614092 - 11614169
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagaga 208  Q
    ||||||||||||| | || ||||||| |||||||| |||| ||||||||||  |||| ||| |||||| |||||||||    
T  11614092 tgttttatcctggaggcggcgtggttgatagtctgccttgcacaattttgagcagtgccataaaacgttttaaagaga 11614169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 290
Target Start/End: Original strand, 29610986 - 29611015
Alignment:
Q  261 ttttaactaattttgactattgttccaaca 290  Q
    ||||||||||||||||||||||||||||||    
T  29610986 ttttaactaattttgactattgttccaaca 29611015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 1e-61; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 31 - 290
Target Start/End: Original strand, 44957336 - 44957595
Alignment:
Q  31 tatcaatgcaatattagaatggtcttagcaccatactttgaa-gtgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgg 129  Q
    ||||||||  |||||||| |||||||||||||||| |||||| ||||||||| |||||||||  |||||||||||| |||||||||| |||||| || ||    
T  44957336 tatcaatgtcatattagagtggtcttagcaccata-tttgaaggtgtatttctagaacagattatatagtgcaataggactctgatacagttgtagcagg 44957434  T
Q  130 gctgttttatcctggggacgtcgtggttaatagtctgcttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcag 229  Q
     |||||||||||||| || ||||||||| |||||||||||| ||||||||    |||| ||  |||||||||||||||| ||| ||| | |  |||||||    
T  44957435 actgttttatcctggagatgtcgtggttgatagtctgcttgcacaattttttgcagtgccacaaaacgtcttaaagagaacgacctagtccatgactcag 44957534  T
Q  230 cctagtaatctcttcggtgacaagaaatattttttaactaattttgactattgttccaaca 290  Q
    ||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||    
T  44957535 cctagtaatctcttcggtgacaaaaataattttttaactaattttgactattgttccaaca 44957595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 41 - 290
Target Start/End: Complemental strand, 14104776 - 14104528
Alignment:
Q  41 atattagaatggtcttagcaccatactttgaag-tgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgggctgttttat 139  Q
    ||||| || ||||||||| |||||| || |||| |||||||| |||||| |||||||||||||||| |||||||||| |||||| ||| |||||||||||    
T  14104776 atattggagtggtcttagaaccata-ttggaaggtgtatttctagaacatatcctatagtgcaataggactctgatacagttgtagctaggctgttttat 14104678  T
Q  140 cctggggacgtcgtggttaatagtctgcttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcagcctagtaatc 239  Q
    | |||||||||||||||| ||||| || ||| ||||||||||  |||| || ||||||||||||||||||||| ||| | |||||||||||||||||||     
T  14104677 catggggacgtcgtggttgatagtttgtttgcacaattttgagcagtgacacgaaacgtcttaaagagagcgacctagtccgcgactcagcctagtaatt 14104578  T
Q  240 tcttcggtgacaagaaatattttttaactaattttgactattgttccaaca 290  Q
    | |||| |||||  ||||| |||||||||||||||||||||||||||||||    
T  14104577 tgttcgatgacagaaaata-tttttaactaattttgactattgttccaaca 14104528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 196 - 290
Target Start/End: Original strand, 13060433 - 13060526
Alignment:
Q  196 cgtcttaaagagagcgaactaatacgcgactcagcctagtaatctcttcggtgacaagaaatattttttaactaattttgactattgttccaaca 290  Q
    |||||||| || ||||| ||| | || ||||||||||| |||| ||||||||||||  ||||| ||||||||||||||||||||||||| |||||    
T  13060433 cgtcttaatgaaagcgacctagtccgtgactcagcctaataatgtcttcggtgacataaaata-tttttaactaattttgactattgtttcaaca 13060526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 290
Target Start/End: Original strand, 41558978 - 41559178
Alignment:
Q  89 gatcctatagtgcaataagactctgatatagttgttgctgggctgttttatcctggggacgtcgtggttaatagtctgcttgaacaattttgaaaagtgt 188  Q
    ||||||| | |||||| ||||| ||||| |||||  | ||  ||||||||||  |||||||||||| || ||| | | |||  ||||||||||   ||||    
T  41558978 gatcctacaatgcaattagactttgatacagttgcagttgaactgttttatcacggggacgtcgtgattgataatttacttacacaattttgagtggtgt 41559077  T
Q  189 catgaaacgtcttaaagagagcgaactaatacgcgactcagcctagtaatctcttcggtgacaagaaatattttttaactaattttgactattgttccaa 288  Q
    ||  |||||| |||||||||||||  |||| ||||||||| |||| ||||||||| | ||||   |||||||||| |||||||||| | | |||||||||    
T  41559078 cacaaaacgttttaaagagagcgacataatccgcgactca-cctaataatctctttgatgactgaaaatatttttgaactaattttaaattttgttccaa 41559176  T
Q  289 ca 290  Q
    ||    
T  41559177 ca 41559178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 118 - 212
Target Start/End: Original strand, 9180709 - 9180805
Alignment:
Q  118 agttgttgctgggct-gttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    |||||| |||||||| |||||||||||| | || ||||||| ||||||||| ||| ||||||||| | |||| || |||||||||||||||||||||    
T  9180709 agttgtagctgggcttgttttatcctggaggcggcgtggttgatagtctgccttgcacaattttggacagtgccacgaaacgtcttaaagagagcga 9180805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 118 - 212
Target Start/End: Complemental strand, 18344541 - 18344445
Alignment:
Q  118 agttgttgctgggct-gttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    |||||| |||||||| |||||||||||| | || |||||||||||||||| |||| |||||||||   |||| || |||||||||||||||||||||    
T  18344541 agttgtagctgggcttgttttatcctggagccggcgtggttaatagtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagcga 18344445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 210
Target Start/End: Original strand, 9189788 - 9189882
Alignment:
Q  118 agttgttgctgggct-gttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagc 210  Q
    |||||| |||||||| |||||||||||| | || ||||||| ||||||||| ||| ||||||||| | |||| || |||||||||||||||||||    
T  9189788 agttgtagctgggcttgttttatcctggaggcggcgtggttgatagtctgccttgcacaattttggacagtgccacgaaacgtcttaaagagagc 9189882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 12797020 - 12796939
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| |||| ||||||| |||||||| ||||||||||||||   |||| ||  ||||||||||||||||||||    
T  12797020 tgttttatcctggagacggcgtggttgatagtctgtcttgaacaattttgggcagtgccacaaaacgtcttaaagagagcga 12796939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 30658358 - 30658277
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| ||||||||| ||| ||||||||||  |||| || |||||||||||||||||||||    
T  30658358 tgttttatcctggaggcggcgtggttgatagtctgccttgcacaattttgagtagtgccacgaaacgtcttaaagagagcga 30658277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 212
Target Start/End: Original strand, 25478282 - 25478378
Alignment:
Q  118 agttgttgctgggct-gttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    |||||| |||||||| ||||||| |||| | || ||||||| ||||||||| ||| |||||||||   ||||||| |||||||||||||||||||||    
T  25478282 agttgtagctgggcttgttttattctggaggcggcgtggttgatagtctgccttgcacaattttgggcagtgtcacgaaacgtcttaaagagagcga 25478378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 1934993 - 1935074
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| |||||||| |||| |||||||||   |||| || |||||||||||||||||||||    
T  1934993 tgttttatcctggaggcggcgtggttgatagtctgtcttgcacaattttgggcagtgccacgaaacgtcttaaagagagcga 1935074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 10160724 - 10160805
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| ||||||||| ||| |||||||||   |||| || |||||||||||||||||||||    
T  10160724 tgttttatcctggaggcggcgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagcga 10160805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 19892466 - 19892547
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| ||||||||  ||| ||||||||| | |||| || |||||||||||||||||||||    
T  19892466 tgttttatcctggaggcggcgtggttgatagtctgtgttgcacaattttggacagtgccaggaaacgtcttaaagagagcga 19892547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 31326834 - 31326753
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| |  | ||||||| ||||||||| ||| |||||||||   |||| ||||||||||||||||||||||||    
T  31326834 tgttttatcctggaggtggcgtggttgatagtctgccttgcacaattttgggcagtggcatgaaacgtcttaaagagagcga 31326753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 212
Target Start/End: Original strand, 25497310 - 25497406
Alignment:
Q  118 agttgttgctgggct-gttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    |||||| |||||||| |||||||||||| | || ||||||| |||||||| |||| |||| ||||   ||||| | |||||||||||||||||||||    
T  25497310 agttgtagctgggcttgttttatcctggaggcggcgtggttgatagtctgacttgcacaaatttgggcagtgttacgaaacgtcttaaagagagcga 25497406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 212
Target Start/End: Complemental strand, 30651039 - 30650943
Alignment:
Q  118 agttgttgctgggct-gttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    |||||| |||||||| |||||||| ||| | || ||||||| ||||||||| ||| |||||||||   |||| || |||||||||||||||||||||    
T  30651039 agttgtagctgggcttgttttatcttggaggcggcgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagcga 30650943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 212
Target Start/End: Complemental strand, 29677474 - 29677395
Alignment:
Q  134 ttttatcctggggacgtcgtggttaatagtctgctt-gaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||| | || ||||||| ||||||||||| | |||||||||   |||| || |||||||||||||||||||||    
T  29677474 ttttatcctggaggcggcgtggttgatagtctgctttgcacaattttgggcagtgccacgaaacgtcttaaagagagcga 29677395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 28603374 - 28603312
Alignment:
Q  151 cgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||| |||||||| |||| ||||||||| | ||||||| ||||||| |||||||||||||    
T  28603374 cgtggttgatagtctgtcttgcacaattttggacagtgtcacgaaacgttttaaagagagcga 28603312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 35602017 - 35601936
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| ||| |||| |||| ||||||||| | |||| || ||||||||||||| |||||||    
T  35602017 tgttttatcctggaggcggcgtggttgatactctgtcttgcacaattttggacagtgccacgaaacgtcttaaaaagagcga 35601936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 2e-60; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 31 - 287
Target Start/End: Complemental strand, 19954468 - 19954211
Alignment:
Q  31 tatcaatgcaatattagaatggtcttagcaccatactttgaag-tgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgg 129  Q
    ||||||| | ||||| || || ||||||||||||| || |||| |||||||| ||||||||||||||||||||||| |||||| ||| |||||  |||||    
T  19954468 tatcaataccatattggagtgatcttagcaccata-ttggaaggtgtatttctagaacagatcctatagtgcaataggactcttatacagttgcagctgg 19954370  T
Q  130 gctgttttatcctggggacgtcgtggttaatagtctgcttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcag 229  Q
    |||||||||||  ||||||||||||||| |||||||||||| |||||||||   |||| ||  |||||||||||||||||||| ||| |  ||||||||     
T  19954369 gctgttttatcaaggggacgtcgtggttgatagtctgcttgtacaattttgggcagtgccacaaaacgtcttaaagagagcgatctagtctgcgactcaa 19954270  T
Q  230 cctagtaatctcttcggtgacaagaaatat-tttttaactaattttgactattgttcca 287  Q
    ||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||    
T  19954269 cctagtaatctcttcggtgacagaaaatatatttttaactaattttgactattgttcca 19954211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 102 - 290
Target Start/End: Original strand, 4544221 - 4544410
Alignment:
Q  102 aataagactctgatatagttgttgctgggctgttttatcctggggacgtcgtggttaatagtctgcttgaacaattttgaaaagtgtcatgaaacgtctt 201  Q
    |||| |||||||||| |||||| ||||| |||||||||||| ||||||| |||||| ||||||| |||| ||||||||||  |||| |||||||||||||    
T  4544221 aataggactctgatacagttgtagctggactgttttatcctagggacgtagtggttgatagtctacttgcacaattttgagcagtgccatgaaacgtctt 4544320  T
Q  202 aaagagagcgaactaatacgcgactcagcctagtaatctcttcggtgac--aagaaatattttttaactaattttgactattgttccaaca 290  Q
    ||||||||||| ||| | || ||||||||||||||||||||||||||||  || ||||| |||||||||||||||||||||||||| ||||    
T  4544321 aaagagagcgacctagtccgtgactcagcctagtaatctcttcggtgactgaaaaaata-tttttaactaattttgactattgttctaaca 4544410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 31 - 290
Target Start/End: Complemental strand, 2470170 - 2469910
Alignment:
Q  31 tatcaatgcaatattagaatggtcttagcaccatactttgaag-tgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgg 129  Q
    ||||||| | ||||| || ||||||||| |||||| || |||| | ||||||  ||||| |||||||||||||||| |||||||||| |||||| ||||     
T  2470170 tatcaataccatattggagtggtcttagaaccata-ttggaaggtatatttctcgaacaaatcctatagtgcaataggactctgatacagttgtagctgt 2470072  T
Q  130 gctgttttatcctggggacgtcgtggttaatagtctgcttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcag 229  Q
    | |||||||||||||||||||||| ||| |||||||||||| ||||||||||  |||| ||  |||||||||||||||||||| ||| | ||| |||| |    
T  2470071 gttgttttatcctggggacgtcgtagttgatagtctgcttgcacaattttgagcagtgccacaaaacgtcttaaagagagcgacctagttcgcaactctg 2469972  T
Q  230 cct-agtaatctcttcggtgaca-agaaatattttttaactaattttgactattgttccaaca 290  Q
    ||| |  |||||||||||||||| | ||||| |||||||| |||||||||||||||| |||||    
T  2469971 cctgataaatctcttcggtgacagaaaaata-tttttaaccaattttgactattgtttcaaca 2469910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 73 - 284
Target Start/End: Complemental strand, 19949972 - 19949760
Alignment:
Q  73 gtgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgggctgttttatcctggggacgtcgtggttaatagtctgcttgaa 172  Q
    ||||||||| ||||||||||||||||||||||| || ||| ||| | |||  |||| |||||||||||||| ||||||| ||||| ||||||||||||      
T  19949972 gtgtatttctagaacagatcctatagtgcaataggattcttatacaattgcagctgagctgttttatcctgaggacgtcatggttgatagtctgcttgct 19949873  T
Q  173 caattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcagcctagtaatctcttcggtgacaagaaatat-tttttaactaat 271  Q
    ||||||||   |||| || ||||| |||||||||||||||  || | || |||||||||||||||||||||||||||||  ||| || ||||||||||||    
T  19949872 caattttgggcagtgccacgaaacttcttaaagagagcgacgtagtccgtgactcagcctagtaatctcttcggtgacagaaaaaatatttttaactaat 19949773  T
Q  272 tttgactattgtt 284  Q
    |||||||| ||||    
T  19949772 tttgactactgtt 19949760  T

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Target: chr8; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 50 - 290
Target Start/End: Complemental strand, 34517417 - 34517179
Alignment:
Q  50 tggtcttagcaccatactttgaagtgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgggctgttttatcctggggacg 149  Q
    |||| ||||||| ||| ||  ||||||||||  |||||| ||| || | | || || |||||||||| |||||| | || | ||||||||| ||||| ||    
T  34517417 tggttttagcacaatatttgaaagtgtatttttagaacatatcttacaatacagtaggactctgatacagttgtagttgagttgttttatcttgggggcg 34517318  T
Q  150 tcgtggttaatagtctgcttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcagcctagtaatctcttcggtga 249  Q
    |||||||| ||||||| |||| |||||||||| | ||| || ||||||||||||||  | ||| ||| |  | |||||| |||| |||||||||| ||||    
T  34517317 tcgtggttgatagtctccttgcacaattttgaca-gtgccacgaaacgtcttaaaggaaacgatctactctgtgactcaacctaataatctcttcagtga 34517219  T
Q  250 caagaaatattttttaactaattttgactattgttccaaca 290  Q
    ||  |||||||||| ||||||||||||||||||||||||||    
T  34517218 cataaaatattttt-aactaattttgactattgttccaaca 34517179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 73 - 245
Target Start/End: Complemental strand, 7145969 - 7145797
Alignment:
Q  73 gtgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgggctgttttatcctggggacgtcgtggttaatagtctgcttgaa 172  Q
    ||||||||| |||||| |||||| | |||| || ||||| |||| |||||| |||| |||||||||| ||| ||  ||||| ||| |||||||||||| |    
T  7145969 gtgtatttctagaacatatcctacaatgcagtaggactccgatacagttgtagctgagctgttttattctgtgggtgtcgtagttgatagtctgcttgca 7145870  T
Q  173 caattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcagcctagtaatctcttcg 245  Q
    ||||||| || |||||||  ||| || |||| ||||||||  |||| | ||||| | |||| |||||||||||    
T  7145869 caattttaaacagtgtcacaaaatgtgttaacgagagcgacttaattcacgacttaacctaataatctcttcg 7145797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 127 - 290
Target Start/End: Complemental strand, 20072196 - 20072034
Alignment:
Q  127 tgggctgttttatcctggggacgtcgtggttaatagtctgcttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgact 226  Q
    |||||||||||||| ||| |||||||||||| ||| ||| |||| ||||||||   || ||||| |||| |||||||||||||||| |||||  || |||    
T  20072196 tgggctgttttatc-tggagacgtcgtggttgataatctacttgcacaattttaggaaatgtcacgaaatgtcttaaagagagcgacctaatctgcaact 20072098  T
Q  227 cagcctagtaatctcttcggtgacaagaaatattttttaactaattttgactattgttccaaca 290  Q
     | || ||||||||||||| ||||  ||||||||||| ||||  |||| ||||| |||| ||||    
T  20072097 tatcccagtaatctcttcgatgactggaaatatttttgaactttttttaactatggttcgaaca 20072034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 30779044 - 30778954
Alignment:
Q  50 tggtcttagcaccatactttgaagtgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgggctgttttatc 140  Q
    |||||||||||||||  ||  ||||||||||| |||||||||||||||||| |||| |||||||||| |||||| |||  |||||||||||    
T  30779044 tggtcttagcaccatttttgaaagtgtatttctagaacagatcctatagtgtaatatgactctgatacagttgtagctaagctgttttatc 30778954  T

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Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 290
Target Start/End: Complemental strand, 30777123 - 30777026
Alignment:
Q  192 gaaacgtcttaaagagagcgaactaatacgcgactcagcctagtaatctcttcggtgacaagaaatattttttaactaattttgactattgttccaaca 290  Q
    |||||||||||||||||| || ||| |  | |||||| |||| |||| |||||| |||||| ||||| ||||||||| |||||||||||| ||||||||    
T  30777123 gaaacgtcttaaagagagtgacctagtctgtgactcaacctaataatttcttcgatgacaaaaaata-tttttaacttattttgactattattccaaca 30777026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 28564826 - 28564926
Alignment:
Q  137 tatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcagcctagt 235  Q
    |||||||  |||| |||||||||||||||| |||||||||||||||  |||||||||||| || ||| ||||||||| || || || |||||| ||||||    
T  28564826 tatcctgcagacggcgtggttaatagtctgtcttgaacaattttgagcagtgtcatgaaatgttttatagagagcgacctgat-cgtgactcaacctagt 28564924  T
Q  236 aa 237  Q
    ||    
T  28564925 aa 28564926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 28572449 - 28572549
Alignment:
Q  137 tatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcagcctagt 235  Q
    |||||||  |||| |||||||||||||||| |||||||||||||||  |||||||||||| || ||| ||||||||| || || || |||||| ||||||    
T  28572449 tatcctgcagacggcgtggttaatagtctgtcttgaacaattttgagcagtgtcatgaaatgttttatagagagcgacctgat-cgtgactcaacctagt 28572547  T
Q  236 aa 237  Q
    ||    
T  28572548 aa 28572549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 2355478 - 2355537
Alignment:
Q  151 cgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagag 209  Q
    ||||||| |||||||| |||| ||||||||||||||||||| ||||||||||||| ||||    
T  2355478 cgtggttgatagtctgtcttgcacaattttgaaaagtgtcacgaaacgtcttaaaaagag 2355537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 96 - 179
Target Start/End: Complemental strand, 28237923 - 28237840
Alignment:
Q  96 tagtgcaataagactctgatatagttgttgctgggctgttttatcctggggacgtcgtggttaatagtctgcttgaacaatttt 179  Q
    |||||||||| |||||||||| |||||| | |||| ||||||||||||   ||||||||||| ||||||||  || ||||||||    
T  28237923 tagtgcaataggactctgatacagttgtagttgggttgttttatcctgaaaacgtcgtggttgatagtctgtatgcacaatttt 28237840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 31449866 - 31449947
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| |||||||| |||| |||||||||   |||| || |||||||||||||||||||||    
T  31449866 tgttttatcctggaggcggcgtggttgatagtctgtcttgcacaattttgggcagtgccacgaaacgtcttaaagagagcga 31449947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 237
Target Start/End: Complemental strand, 1807565 - 1807462
Alignment:
Q  134 ttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcagcct 232  Q
    ||||||||| | | || ||||||| ||||||||| ||| |||||||||   ||||||| ||||||||||||||||||||| ||| | || |||||| |||    
T  1807565 ttttatcctagaggcggcgtggttgatagtctgccttgcacaattttgggcagtgtcacgaaacgtcttaaagagagcgacctagt-cgtgactcaacct 1807467  T
Q  233 agtaa 237  Q
    |||||    
T  1807466 agtaa 1807462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 212
Target Start/End: Complemental strand, 34118576 - 34118480
Alignment:
Q  118 agttgttgctgggct-gttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    |||||| |||||||| ||||||||||   | || ||||||| ||||||||| ||| |||||||||   |||| ||||||||||||||||||||||||    
T  34118576 agttgtagctgggcttgttttatcctaaaggcgacgtggttgatagtctgccttgcacaattttgggcagtgccatgaaacgtcttaaagagagcga 34118480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 212
Target Start/End: Original strand, 40125870 - 40125966
Alignment:
Q  118 agttgttgctgggct-gttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    |||||| |||||||| |||||||| ||| | || ||||||| ||||||||| ||| |||||||||   |||| || |||||||||||||||||||||    
T  40125870 agttgtagctgggcttgttttatcttggaggcggcgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagcga 40125966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 1910988 - 1911050
Alignment:
Q  151 cgtggttaatagtctgctt-gaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||| ||||||||||| | ||||||||||  |||| || |||||||||||||||||||||    
T  1910988 cgtggttgatagtctgctttgcacaattttgactagtgccacgaaacgtcttaaagagagcga 1911050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 15875668 - 15875749
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| |||||||| |||| |||||||||   |||| || |||||||| ||||||||||||    
T  15875668 tgttttatcctggaggcggcgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacgtcctaaagagagcga 15875749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 17793548 - 17793471
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagaga 208  Q
    ||||||||| ||| || | ||||||| ||||| || |||| ||||||||||  |||||| ||||||||||||||||||    
T  17793548 tgttttatcgtggagatgacgtggttgatagtttgacttgtacaattttgagcagtgtcgtgaaacgtcttaaagaga 17793471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 19166729 - 19166648
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctgct-tgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| |||||||||  || |||||||||   |||| || |||||||||||||||||||||    
T  19166729 tgttttatcctggaggcggcgtggttgatagtctgccgtgcacaattttgggcagtgccacgaaacgtcttaaagagagcga 19166648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 44925923 - 44926004
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| |||||||| |||| |||||||||   |||| || ||||||| |||||||||||||    
T  44925923 tgttttatcctggaggcggcgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacgttttaaagagagcga 44926004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 118 - 208
Target Start/End: Complemental strand, 33416657 - 33416565
Alignment:
Q  118 agttgttgctgggct-gttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagaga 208  Q
    |||||| |||||||| |||||||| ||| | || ||||||| |||||||| |||| |||||||||   |||| || |||||||||||||||||    
T  33416657 agttgtagctgggcttgttttatcttggaggcggcgtggttgatagtctgtcttgcacaattttgggcagtgccacgaaacgtcttaaagaga 33416565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 1e-58; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 41 - 290
Target Start/End: Original strand, 6898266 - 6898514
Alignment:
Q  41 atattagaatggtcttagcaccatactttgaag-tgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgggctgttttat 139  Q
    |||| ||| ||||||||||| |||| || |||| |||||||  ||||||||||||||||||||||| |||||||||| ||||||||||||| ||||| ||    
T  6898266 atataagagtggtcttagcatcata-ttggaaggtgtatttttagaacagatcctatagtgcaataggactctgatacagttgttgctgggttgttt-at 6898363  T
Q  140 cctggggacgtcgtggttaatagtctgcttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcagcctagtaatc 239  Q
    ||||||||||| |||||| |||||||||||| ||||||||| | |||| ||  |||| ||||||||||||||| ||| | ||||||||||||||||||||    
T  6898364 cctggggacgttgtggttgatagtctgcttgcacaattttggacagtgccacaaaacatcttaaagagagcgatctagtccgcgactcagcctagtaatc 6898463  T
Q  240 tcttcggtgaca-agaaatattttttaactaattttgactattgttccaaca 290  Q
    |||||||||||| | ||||| ||||||||||||||||||| |||||| ||||    
T  6898464 tcttcggtgacagaaaaata-tttttaactaattttgactcttgttctaaca 6898514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 31 - 290
Target Start/End: Original strand, 29478054 - 29478314
Alignment:
Q  31 tatcaatgcaatattagaatggtcttagcaccatactttgaa-gtgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgg 129  Q
    ||||||| | |||||||| |||||||||||||||| |||||| ||||||||| |||||| ||||| | |||||||| |||| |||||  ||||| |||||    
T  29478054 tatcaataccatattagagtggtcttagcaccata-tttgaaggtgtatttctagaacatatcctgtggtgcaatatgactatgatactgttgtagctgg 29478152  T
Q  130 gctgttttatcctggggacgtcgtggttaatagtctgcttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcag 229  Q
    ||| ||||||| || || |||| ||||| |||||||| ||| |||||||||   |||| || |||||||||| ||||||||||  || | | ||||||||    
T  29478153 gctattttatcatgtgggcgtcatggttgatagtctgtttgcacaattttgggcagtgccacgaaacgtcttgaagagagcgacttagtccacgactcag 29478252  T
Q  230 cctagtaatctcttcggtgacaagaaatat-tttttaactaa-ttttgactattgttccaaca 290  Q
    ||||||| |||||||| |||| ||||| || ||| ||||||| |||| |||||||||||||||    
T  29478253 cctagtagtctcttcgatgac-agaaaaatctttataactaattttttactattgttccaaca 29478314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 45 - 290
Target Start/End: Original strand, 23616295 - 23616544
Alignment:
Q  45 tagaatggtcttagcaccatactttgaa-gtgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgggctgttttatcctg 143  Q
    |||| |||||||||||||||| |||||| ||| ||||| ||||  |||||||||||||| || || ||||||| | |||| | || | ||||||||| ||    
T  23616295 tagagtggtcttagcaccata-tttgaaggtgaatttctagaatggatcctatagtgcagtaggattctgatacaattgtagttgagttgttttatcatg 23616393  T
Q  144 gggacgtcgtggttaatagtctgcttgaacaattttg----aaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcagcctagtaatc 239  Q
     ||||||||||||| ||||| |||||| |||||||||    |  |||  ||  |||  ||||||| |||||||  || | | |||||| ||||| ||||     
T  23616394 aggacgtcgtggttgatagtatgcttgcacaattttggacaatcagtaccaaaaaagatcttaaaaagagcgatttagtccacgactccgcctaataata 23616493  T
Q  240 tcttcggtgacaagaaatattttttaactaattttgactattgttccaaca 290  Q
    |||||||||||   |||||||||||| |||||||||| |||||||||||||    
T  23616494 tcttcggtgactgaaaatattttttacctaattttgattattgttccaaca 23616544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 152 - 274
Target Start/End: Original strand, 1289353 - 1289474
Alignment:
Q  152 gtggttaatagtctgcttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcagcctagtaatctcttcggtgaca 251  Q
    |||||| |||||||||||| | ||||||||  |||||||  |||||||||||||||||||| ||| |  |||| ||| |||||||||||||||||||||     
T  1289353 gtggttgatagtctgcttgcataattttgagtagtgtcacaaaacgtcttaaagagagcgacctattctgcgattcaacctagtaatctcttcggtgact 1289452  T
Q  252 agaaatattttttaactaatttt 274  Q
      ||||| |||||||||||||||    
T  1289453 gaaaata-tttttaactaatttt 1289474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 41 - 163
Target Start/End: Original strand, 25832272 - 25832394
Alignment:
Q  41 atattagaatggtcttagcaccatactttgaagtgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgggctgttttatc 140  Q
    ||||| || |||||||| ||||||| ||  ||||||||||| | ||||||| |||||||| |||| |||||||||| |||||| | |||| |||||||||    
T  25832272 atattggagtggtcttaacaccatatttaaaagtgtatttctataacagattctatagtgtaatatgactctgatacagttgtaggtgggttgttttatc 25832371  T
Q  141 ctggggacgtcgtggttaatagt 163  Q
     ||||| |||||||||| |||||    
T  25832372 atgggggcgtcgtggttgatagt 25832394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 20130251 - 20130341
Alignment:
Q  50 tggtcttagcaccatactttgaagtgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgggctgttttatc 140  Q
    |||||||||||||||| ||  |||||||||||  |||| ||||||| ||| || ||||||||||||| |||||| | || | |||||||||    
T  20130251 tggtcttagcaccatatttaaaagtgtatttcatgaacggatcctacagtacagtaagactctgatacagttgtagttgagttgttttatc 20130341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 44423137 - 44423242
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcagc 230  Q
    ||||||||||||| | || ||| ||| ||||||||| |||||||||||||   |||| || ||||||||||||||||||||| || || || |||||| |    
T  44423137 tgttttatcctggaggcggcgtagttgatagtctgccttgaacaattttggtcagtgccacgaaacgtcttaaagagagcgatctgat-cgtgactcaac 44423235  T
Q  231 ctagtaa 237  Q
    |||||||    
T  44423236 ctagtaa 44423242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 4579603 - 4579522
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| ||||||||| ||| |||||||||   |||| || |||||||||||||||||||||    
T  4579603 tgttttatcctggaggcggcgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagcga 4579522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 9650967 - 9651048
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| |||||||| |||| |||||||||   |||| || |||||||||||||||||||||    
T  9650967 tgttttatcctggaggcggcgtggttgatagtctgtcttgcacaattttgggcagtgccacgaaacgtcttaaagagagcga 9651048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 23866163 - 23866082
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| |||||||| |||| |||||||||   |||| || |||||||||||||||||||||    
T  23866163 tgttttatcctggaggcggcgtggttgatagtctgtcttgcacaattttgggcagtgccacgaaacgtcttaaagagagcga 23866082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 44510677 - 44510756
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagc 210  Q
    ||||||||||||| | || ||||||| |||||||| |||| ||||||||| | |||| ||  ||||||||||||||||||    
T  44510677 tgttttatcctggaggcggcgtggttgatagtctgtcttgcacaattttggacagtgccacaaaacgtcttaaagagagc 44510756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 23246933 - 23247014
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| |||||||| |||| |||||||||   |||| || ||||| |||||||||||||||    
T  23246933 tgttttatcctggaggcggcgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacatcttaaagagagcga 23247014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 26341294 - 26341213
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| |||||||| |||| |||||||||   |||| || |||| ||||||||||||||||    
T  26341294 tgttttatcctggaggcggcgtggttgatagtctgccttgcacaattttgggcagtgccacgaaatgtcttaaagagagcga 26341213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 15642288 - 15642248
Alignment:
Q  172 acaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||| | ||||||||||||||||||||| |||||||    
T  15642288 acaattttggatagtgtcatgaaacgtcttaaaaagagcga 15642248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 2e-57; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 31 - 290
Target Start/End: Original strand, 18265404 - 18265664
Alignment:
Q  31 tatcaatgcaatattagaatggtcttagcaccatactttgaag-tgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgg 129  Q
    ||||||| | ||||| || |||||||||||||||| || |||| |||||||| | |||||||| || ||| |||||||||||||||| |||||| ||||     
T  18265404 tatcaataccatattggattggtcttagcaccata-ttggaaggtgtatttctataacagatcatagagtacaataagactctgatacagttgtagctga 18265502  T
Q  130 gctgttttatcctggggacgtcgtggttaatagtctgcttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcag 229  Q
    ||||||||||| |||||||||||||||| |||||||| ||| ||||||||    |||||||  |||||||||||||||||||| ||| | ||| ||||||    
T  18265503 gctgttttatcatggggacgtcgtggttgatagtctgattgcacaattttaggcagtgtcacaaaacgtcttaaagagagcgacctagtccgctactcag 18265602  T
Q  230 cctagtaatctcttcggtgacaagaaatat-tttttaactaattttgactattgttccaaca 290  Q
    ||||||||||||||||||||||  ||| ||  ||||||||||||||||||||||||||||||    
T  18265603 cctagtaatctcttcggtgacagaaaaaatacttttaactaattttgactattgttccaaca 18265664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 31 - 290
Target Start/End: Original strand, 1286165 - 1286422
Alignment:
Q  31 tatcaatgcaatattagaatggtcttagcaccatactttgaa-gtgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgg 129  Q
    ||||||| | ||||| || |||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||| |||||||||| |||||| ||||     
T  1286165 tatcaataccatattggagtggtcttagcaccata-tttgaatgtgtatttctagaacagatcctatagtgcaataggactctgatagagttgtagctga 1286263  T
Q  130 gctgttttatcctggggacgtcgtggttaatagtctgcttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcag 229  Q
    | ||||||||| ||| |||||||||||||||| |||  ||| ||||||||    | || ||  ||| |||||||||||||||   || | ||||||||||    
T  1286264 gttgttttatcatggagacgtcgtggttaataatctagttgcacaattttcggcaatgcca-caaatgtcttaaagagagcggcatagtccgcgactcag 1286362  T
Q  230 cctagtaatctcttcggtgacaagaaatattttttaactaattttgactattgttccaaca 290  Q
    ||||||||||||| ||||||||  ||||| |||||||||||||||||| ||||||||||||    
T  1286363 cctagtaatctctccggtgacagaaaata-tttttaactaattttgacaattgttccaaca 1286422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 41587160 - 41587239
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagc 210  Q
    ||||||||||||| | || ||||||| |||||||| |||| ||||||||||| ||||||| |||||||||||||||||||    
T  41587160 tgttttatcctggaggcggcgtggttgatagtctgtcttgcacaattttgaacagtgtcacgaaacgtcttaaagagagc 41587239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 107 - 250
Target Start/End: Original strand, 25215203 - 25215344
Alignment:
Q  107 gactctgatatagttgttgctgggctgttttatcctggggacgtcgtggttaatagtctgcttgaacaattttgaaaagtgtcatgaaacgtcttaaaga 206  Q
    |||||||||||||||||  ||||  ||||||||||| ||  |||| ||||| ||||| | |||| ||||||||    | |||||| ||| ||||||||||    
T  25215203 gactctgatatagttgtacctggtttgttttatcctagg--cgtcatggttgatagtatacttgcacaattttaggcaatgtcataaaatgtcttaaaga 25215300  T
Q  207 gagcgaactaatacgcgactcagcctagtaatctcttcggtgac 250  Q
    |||||| ||| |  ||||||||||| | ||||||||||||||||    
T  25215301 gagcgacctagtctgcgactcagccaaataatctcttcggtgac 25215344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 107 - 250
Target Start/End: Original strand, 25279354 - 25279495
Alignment:
Q  107 gactctgatatagttgttgctgggctgttttatcctggggacgtcgtggttaatagtctgcttgaacaattttgaaaagtgtcatgaaacgtcttaaaga 206  Q
    |||||||||||||||||  ||||  ||||||||||| ||  |||| ||||| ||||| | |||| ||||||||    | |||||| ||| ||||||||||    
T  25279354 gactctgatatagttgtacctggtttgttttatcctagg--cgtcatggttgatagtatacttgcacaattttaggcaatgtcataaaatgtcttaaaga 25279451  T
Q  207 gagcgaactaatacgcgactcagcctagtaatctcttcggtgac 250  Q
    |||||| ||| |  ||||||||||| | ||||||||||||||||    
T  25279452 gagcgacctagtctgcgactcagccaaataatctcttcggtgac 25279495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 118 - 212
Target Start/End: Original strand, 36937496 - 36937592
Alignment:
Q  118 agttgttgctgggct-gttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    |||||| |||||||| |||||||||||| | || ||||||| ||||||||| ||| |||||||||   |||| ||||||||||||||||||||||||    
T  36937496 agttgtagctgggcttgttttatcctggaggcggcgtggttgatagtctgccttgcacaattttgggcagtgccatgaaacgtcttaaagagagcga 36937592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 118 - 212
Target Start/End: Original strand, 36942250 - 36942346
Alignment:
Q  118 agttgttgctgggct-gttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    |||||| |||||||| |||||||||||| | || ||||||| ||||||||| ||| |||||||||   |||| ||||||||||||||||||||||||    
T  36942250 agttgtagctgggcttgttttatcctggaggcggcgtggttgatagtctgccttgcacaattttgggcagtgccatgaaacgtcttaaagagagcga 36942346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 237
Target Start/End: Original strand, 6155404 - 6155524
Alignment:
Q  118 agttgttgctgggct-gttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcgaact 215  Q
    |||||| |||||||| |||||||||||| | ||  |||||| |||||||| |||| | ||||||| | |||| || ||||||||||||||||||||| ||    
T  6155404 agttgtagctgggcttgttttatcctggaggcggtgtggttgatagtctgtcttgtaaaattttggacagtgccacgaaacgtcttaaagagagcgacct 6155503  T
Q  216 aatacgcgactcagcctagtaa 237  Q
     || || |||||| ||||||||    
T  6155504 gat-cgtgactcaacctagtaa 6155524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 7451853 - 7451772
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | |  ||||||| ||||||||| ||| ||||||||| | |||| || |||||||||||||||||||||    
T  7451853 tgttttatcctggaggcagcgtggttgatagtctgccttgcacaattttggacagtgccacgaaacgtcttaaagagagcga 7451772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 12103120 - 12103039
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| ||||||||| ||| |||||||||   |||| || |||||||||||||||||||||    
T  12103120 tgttttatcctggaggcggcgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagcga 12103039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 26667367 - 26667286
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| ||||||||| ||| |||||||||   |||| || |||||||||||||||||||||    
T  26667367 tgttttatcctggaggcggcgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagcga 26667286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 26938964 - 26938883
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| ||||||||| ||| |||||||||   |||| || |||||||||||||||||||||    
T  26938964 tgttttatcctggaggcggcgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagcga 26938883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 29167973 - 29168054
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| ||||||||| ||| |||||||||   |||| || |||||||||||||||||||||    
T  29167973 tgttttatcctggaggcggcgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagcga 29168054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 35679875 - 35679956
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| ||||||||| ||| ||||||||  | |||| || |||||||||||||||||||||    
T  35679875 tgttttatcctggaggcggcgtggttgatagtctgccttgcacaatttttgacagtgccacgaaacgtcttaaagagagcga 35679956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 37652830 - 37652911
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| |  | ||||||| ||||||||| ||| ||||||||| | | ||||| |||||||||||||||||||||    
T  37652830 tgttttatcctggaggtggcgtggttgatagtctgccttgcacaattttggacaatgtcacgaaacgtcttaaagagagcga 37652911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 212
Target Start/End: Original strand, 12501884 - 12501980
Alignment:
Q  118 agttgttgctgggct-gttttatcctggggacgtcgtggttaatagtctgctt-gaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    |||||| |||||||| |||||||||||| | || ||||||| |||||||| || | |||||||||   |||| || |||||||||||||||||||||    
T  12501884 agttgtagctgggcttgttttatcctggaggcggcgtggttgatagtctgttttgcacaattttgggcagtgccacgaaacgtcttaaagagagcga 12501980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 212
Target Start/End: Complemental strand, 42001544 - 42001448
Alignment:
Q  118 agttgttgctgggct-gttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    |||||| |||||||| |||||||||||| | || ||||||| |||||||| |||  |||||||||   |||| || |||||||||||||||||||||    
T  42001544 agttgtagctgggcttgttttatcctggaggcggcgtggttgatagtctgtcttacacaattttgggcagtgccacgaaacgtcttaaagagagcga 42001448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 556790 - 556709
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| ||||||||| ||| |||||||||   |||| ||  ||||||||||||||||||||    
T  556790 tgttttatcctggaggcggcgtggttgatagtctgccttgcacaattttgggcagtgccacaaaacgtcttaaagagagcga 556709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 561562 - 561481
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| ||||||||| ||| |||||||||   |||| ||  ||||||||||||||||||||    
T  561562 tgttttatcctggaggcggcgtggttgatagtctgccttgcacaattttgggcagtgccacaaaacgtcttaaagagagcga 561481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 32461549 - 32461630
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| |||||||| |||| |||||||||   |||| ||  ||||||||||||||||||||    
T  32461549 tgttttatcctggaggcggcgtggttgatagtctgtcttgcacaattttgggcagtgccacaaaacgtcttaaagagagcga 32461630  T

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Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 39523144 - 39523063
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| |||||||| |||| |||||||||    ||| || |||||||||||||||||||||    
T  39523144 tgttttatcctggaggcggcgtggttgatagtctgtcttgcacaattttgggcggtgccacgaaacgtcttaaagagagcga 39523063  T

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Target: scaffold0018 (Bit Score: 98; Significance: 7e-48; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 73 - 285
Target Start/End: Original strand, 171657 - 171869
Alignment:
Q  73 gtgtatttccagaacagatcctatagtgcaataagactctgatatagttgttgctgggctgttttatcctggggacgtcgtggttaatagtctgcttgaa 172  Q
    ||||||||| ||||||||||||||||||||||| || ||| ||| |||||| | ||||||||||||||||  ||||||||||||| |||||||||||| |    
T  171657 gtgtatttctagaacagatcctatagtgcaataggattcttatacagttgtagttgggctgttttatcct-aggacgtcgtggttgatagtctgcttgca 171755  T
Q  173 caattttgaaaagtgtcatgaaacgtcttaaagagagcgaactaatacgcgactcagcctagtaatctcttcggtgacaagaaatat-tttttaactaat 271  Q
    |||||||    |||| || ||||||||||||||||||||| ||| |  ||||||||||||||||||||||||| ||| |  ||| || ||||||||||||    
T  171756 caattttaggcagtgccacgaaacgtcttaaagagagcgacctagtctgcgactcagcctagtaatctcttcgatgagagaaaaaatatttttaactaat 171855  T
Q  272 tttgactattgttc 285  Q
    ||||||||||||||    
T  171856 tttgactattgttc 171869  T

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Target: scaffold0182 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 212
Target Start/End: Original strand, 9872 - 9968
Alignment:
Q  118 agttgttgctgggct-gttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    |||||| |||||||| |||||||||||| | || ||||||| ||||||||| ||| |||||||||   |||| || |||||||||||||||||||||    
T  9872 agttgtagctgggcttgttttatcctggaggcggcgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagcga 9968  T

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Target: scaffold0057 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 35729 - 35649
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcg 211  Q
    ||||||||||||| | || ||||||| ||||||||| ||| |||||||||   ||||||| ||||||||||||||||||||    
T  35729 tgttttatcctggaggcggcgtggttgatagtctgccttgcacaattttggccagtgtcacgaaacgtcttaaagagagcg 35649  T

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Target: scaffold0352 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 7199 - 7118
Alignment:
Q  132 tgttttatcctggggacgtcgtggttaatagtctgc-ttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    ||||||||||||| | || ||||||| ||||||||| ||| |||||||||   |||| || |||||||||||||||||||||    
T  7199 tgttttatcctggaggcggcgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagcga 7118  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 212
Target Start/End: Complemental strand, 4184 - 4088
Alignment:
Q  118 agttgttgctgggct-gttttatcctggggacgtcgtggttaatagtctg-cttgaacaattttgaaaagtgtcatgaaacgtcttaaagagagcga 212  Q
    |||||| |||||||| |||||||||||| | || ||||||| |||||||| |||| |||||||||   |||| || |||| ||||||||||||||||    
T  4184 agttgtagctgggcttgttttatcctggaggcggcgtggttgatagtctgccttgcacaattttgggcagtgccacgaaatgtcttaaagagagcga 4088  T

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