View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1149_low_68 (Length: 368)

Name: NF1149_low_68

Description: NF1149

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1149_low_68

[»] chr6 (6 HSPs)

Alignment Details

Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 6)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 210; E-Value: 1e-115

Query Start/End: Original strand, 107 - 368

Target Start/End: Complemental strand, 34820174 - 34819913

Alignment:

Q	107	gcgtctcctttaaagaagaaagggaagagtgataaaggcgagacaaacaagaagaatgatgatagtatttgtacaaagccaccagttgagaaaagagtta	206	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34820174	gcgtctcctttaaagaagaaagggaagagtgataaaggcgagacaaccaagaagaatgatggtagtatttgtacaaagccaccagctgagaaaagagtta	34820075	T

Q	207	gctgccaagaacataaaggaacgagaataaatgtgtttagtgcaaaagcaataagaagatctaagtctgaatcagaaatctttgctggaagttttattga	306	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\| \|\|\|\|
T	34820074	gctgccaagaacataaaggaatgagactaaatgtgtttagtgcaaaagcaattagaagatccaagtctgaatcagaaatcttggctgggagttttgttga	34819975	T

Q	307	cgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgacc	368	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34819974	cgagagtatcaccaaaaatgatgatggtacgtatgcggtggttttgcaagctaagattgacc	34819913	T

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Target: chr6; HSP #2

Raw Score: 45; E-Value: 1e-16

Query Start/End: Original strand, 112 - 164

Target Start/End: Complemental strand, 34819893 - 34819841

Alignment:

Q	112	tcctttaaagaagaaagggaagagtgataaaggcgagacaaacaagaagaatg	164	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	34819893	tcctttaaagaagaaagggaagagtgataaaggcgaggccaacaagaagaatg	34819841	T

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Target: chr6; HSP #3

Raw Score: 33; E-Value: 0.000000002

Query Start/End: Original strand, 172 - 236

Target Start/End: Complemental strand, 34835165 - 34835101

Alignment:

Q	172	tatttgtacaaagccaccagttgagaaaagagttagctgccaagaacataaaggaacgagaataa	236	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	34835165	tatttgtacaaagacgccggtcgagaaaagagttaggtgtcatgaacataaaggaatgagaataa	34835101	T

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Target: chr6; HSP #4

Raw Score: 32; E-Value: 0.000000008

Query Start/End: Original strand, 296 - 335

Target Start/End: Complemental strand, 34820846 - 34820807

Alignment:

Q	296	agttttattgacgagagtatcaccaaaaatgatgttggta	335	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34820846	agttttgttgacgagagtatcacaaaaaatgatgttggta	34820807	T

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Target: chr6; HSP #5

Raw Score: 31; E-Value: 0.00000003

Query Start/End: Original strand, 296 - 358

Target Start/End: Complemental strand, 34820729 - 34820667

Alignment:

Q	296	agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagct	358	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\| \|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|
T	34820729	agttttgttgacgagagtatcacaaaaaatgatattggtacgtcagaggtggctttggaagct	34820667	T

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Target: chr6; HSP #6

Raw Score: 29; E-Value: 0.0000005

Query Start/End: Original strand, 296 - 352

Target Start/End: Complemental strand, 34820612 - 34820556

Alignment:

Q	296	agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttg	352	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	34820612	agttttgttgacgaaagtatcactaaaattgatgtcggtatgtcggaggtggttttg	34820556	T

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