View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_low_69 (Length: 366)
Name: NF1149_low_69
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_69 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 39812566 - 39812919
Alignment:
| Q |
1 |
catgatcatcaagcaattgctgatgcattactcaagcttttatcagagaaaaacctatggcatgagtgcagaaacaatggttggaagaatatacaccttt |
100 |
Q |
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| T |
39812566 |
catgatcatcaagcaattgctgatgcattactcaagcttttatcagagaaaaacctatggcatgagtgcagaaacaatggttggaagaatatacaccttt |
39812665 |
T |
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| Q |
101 |
tctcgtggccggaacactgccgaacttatttgacacgcgtggatgcgtgtagaatgaggcatccacaatggcaaactactactactgaagatgatgtaga |
200 |
Q |
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| T |
39812666 |
tctcgtggccggaacattgccgaacttatttgacacgcgtggatgcgtgtagaatgaggcatccacaatggcaaactactactactgaagatgatgtaga |
39812765 |
T |
|
| Q |
201 |
tgttgaagagtctttcaatgattcacttaaggatgttcaggacatgtcacttaggctttcaattgatggtgaatttgctgcatcaagcggtggcagtaac |
300 |
Q |
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| T |
39812766 |
tgttgaagagtctttcaatgattcacttaaggatgttcaggacatgtcacttaggctttcaattgatggtgaatttgctgcatcaagcggtggcagtaac |
39812865 |
T |
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| Q |
301 |
gaagaccaagtgaaacgtgtcttaagcaagataaggaagcaagattctggttca |
354 |
Q |
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| T |
39812866 |
gaagaccaagtgaaacgtgtcttaagcaagataaggaagcaagattctggttca |
39812919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 4 - 272
Target Start/End: Original strand, 15800557 - 15800825
Alignment:
| Q |
4 |
gatcatcaagcaattgctgatgcattactcaagcttttatcagagaaaaacctatggcatgagtgcagaaacaatggttggaagaatatacaccttttct |
103 |
Q |
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| T |
15800557 |
gatcagcaagcaattactaatgcattgctcaagttgttgtcagagaaaaacctgtggcatgactgcagaaaaaatggctggaagaatatacacctattct |
15800656 |
T |
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| Q |
104 |
cgtggccggaacactgccgaacttatttgacacgcgtggatgcgtgtagaatgaggcatccacaatggcaaactactactactgaagatgatgtagatgt |
203 |
Q |
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||||||| |||||||| || ||||||||||| || || | || || || |||||||||||||||||||||||||||||| | | ||| ||| || ||| |
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| T |
15800657 |
cgtggcccgaacactgtcgtacttatttgactcgagtcgcggcttgcaggatgaggcatccacaatggcaaactactactccaggagacgatataactgt |
15800756 |
T |
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| Q |
204 |
tgaagagtctttcaatgattcacttaaggatgttcaggacatgtcacttaggctttcaattgatggtga |
272 |
Q |
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| T |
15800757 |
cgaccagtcattcaatgattcacttaaagacgtgcaggacatgtctcttaggctctctattgatggtga |
15800825 |
T |
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