View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_low_71 (Length: 357)
Name: NF1149_low_71
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_71 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 325
Target Start/End: Complemental strand, 39724561 - 39724237
Alignment:
| Q |
10 |
tcatagggaagaagcttatgctttatggggtgatggagagaaacttagtctctacaaagatgatactacacaacatggcatggcttcaagtggtgtcact |
109 |
Q |
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| T |
39724561 |
tcatggggaagaagcttatgctttatggggtgatggagagaaacttagtctctacaaagatgatactacacaacatggcatggcttcaagtggtgtcact |
39724462 |
T |
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| Q |
110 |
caagttgtctagatatca--------------acaagttggaaatcgatcgagagggttatgtagttgaaatgatgtcannnnnnnnnnnnnnnattgtg |
195 |
Q |
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| T |
39724461 |
caagttgtctagatatcatatgagaaaattcaacaagttggaaatcgatcgagagggttatgtagttgaaatgatgtcatttttttttt-----attgtg |
39724367 |
T |
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| Q |
196 |
aaaaatgtaatattgaaggaaacaaataattaaggaaaaaatgtctgatttgtttgtccttgtttttatacctgtagttgttcattttattatgttgtca |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39724366 |
aaaaatgtaatattgaaggaaacaaataattaaggaaaaaatgtctgatttgtttgtccttgtttttatacctgtagttgttcattttattatgttgtca |
39724267 |
T |
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| Q |
296 |
tatatacctctaatgaattatttctgtgct |
325 |
Q |
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||||||||||||||||||||||| |||||| |
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| T |
39724266 |
tatatacctctaatgaattatttatgtgct |
39724237 |
T |
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