View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_low_73 (Length: 354)
Name: NF1149_low_73
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_73 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 8435185 - 8435524
Alignment:
| Q |
1 |
atttttagatcatcgacaaatttaccattagaattatataatattgctatcattttcggcctttggtttgtgacaaaaccgtgttgatctgtctctacaa |
100 |
Q |
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| T |
8435185 |
atttttagatcatcgacaaagttaccattagaattatataatattgctatcattttcggcctttggtttgtgacaaaaccgtcttgatctgtctcttcaa |
8435284 |
T |
|
| Q |
101 |
atgtgtcggtacggtctcatatagttcaactatttctatctcttattttggacatgcctctaattgtcctctattggcatcttatattttttaaactgag |
200 |
Q |
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| T |
8435285 |
atgtgtcggtacggtctcatatagttcaactatttctatctcttattttggacatgtctctaattgtcctctattggcatcttatattttttaaactgag |
8435384 |
T |
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| Q |
201 |
tatatgtttataagctcgaaattaattaatgcttgatggatatcataaacaaagttaaatttttatcaatgtatgtttgatgagctactcaatttcaatg |
300 |
Q |
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| T |
8435385 |
tataattttataagctcgaaattaattaatgcttgatggatatcataaacaaagttaaatttttatcaatgtatgtttgatgagctactcaatttcaatg |
8435484 |
T |
|
| Q |
301 |
ccacaaactgttcaatcaatttgacaagtcatactaatct |
340 |
Q |
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| T |
8435485 |
ccacaaactgttcaatcaatttgacaagtcatactaatct |
8435524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 322
Target Start/End: Original strand, 8369646 - 8369710
Alignment:
| Q |
257 |
aaatttttatcaatgtatgtttgatgagctactcaatttcaatgccacaaactgttcaatcaattt |
322 |
Q |
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| T |
8369646 |
aaattttgatcaaagcatgtttgatgagctattaaatgtcaatgccacata-tgttcaatcaattt |
8369710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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