View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_low_76 (Length: 350)
Name: NF1149_low_76
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_76 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 73 - 302
Target Start/End: Original strand, 41602551 - 41602780
Alignment:
| Q |
73 |
attgggttctccgacgcggcggtgacaggatgaagttttgttgatttgtgttaaatcttgaaagactggactatccttttcttcctacaaatataaaatt |
172 |
Q |
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| T |
41602551 |
attgggttctccgacgcggcggtgacaggatgaagttttgttgatttgtgttaaatcttgaaagactggactatccttttcttcctacaaatataaaatt |
41602650 |
T |
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| Q |
173 |
gaaattttcaaacctaataccattgaaatttactttaaaatcacagattgaagggttatttgattgatttcactccattaaagttgtatgtgtaggtgaa |
272 |
Q |
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| T |
41602651 |
gaaattttcaaacctaataccattgaaatttactttaaaatcacatattgaagggttatttgattgattttactccattaaagttgtatgtgtagttgaa |
41602750 |
T |
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| Q |
273 |
aaaagaaagagaagaaacatggaagatagg |
302 |
Q |
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| T |
41602751 |
aaaagaaagagaagaaagatggaagatagg |
41602780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 73 - 302
Target Start/End: Complemental strand, 9470661 - 9470432
Alignment:
| Q |
73 |
attgggttctccgacgcggcggtgacaggatgaagttttgttgatttgtgttaaatcttgaaagactggactatccttttcttcctacaaatataaaatt |
172 |
Q |
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| T |
9470661 |
attgggttctccgacgcggcagtgacaggatgaagttttgttgatttgtgttaaatcttgaaagactggactatccttttcttcctacaaatataaaatt |
9470562 |
T |
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| Q |
173 |
gaaattttcaaacctaataccattgaaatttactttaaaatcacagattgaagggttatttgattgatttcactccattaaagttgtatgtgtaggtgaa |
272 |
Q |
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| T |
9470561 |
gaaattttcaaacctaataccattgaaatttgctttaaaatcaaagattgaagggttatttgattgattttactccattaaagttgtatgtgtagttaaa |
9470462 |
T |
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| Q |
273 |
aaaagaaagagaagaaacatggaagatagg |
302 |
Q |
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| T |
9470461 |
aaaagaaagagaaggaggatggaagatagg |
9470432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 198 - 283
Target Start/End: Complemental strand, 53721996 - 53721910
Alignment:
| Q |
198 |
aaatttactttaaaatcacagattgaagggttatttgattgatttcactccattaaagttgtatgtgtaggtg-aaaaaagaaagag |
283 |
Q |
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| T |
53721996 |
aaatttgctttaaaatcatagattgaagggttatttgattgattttgctccattaaagttgtatgtgttgttgcaaaaaagaaagag |
53721910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 296 - 350
Target Start/End: Complemental strand, 47419384 - 47419330
Alignment:
| Q |
296 |
agataggtttcaacgttatgctaagaaccgtcctttttcttgtagacaaaaacca |
350 |
Q |
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| T |
47419384 |
agataggtttcaacgttatgctaagaaccgtcctttttcttgtagacaaaaacca |
47419330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 350
Target Start/End: Complemental strand, 47391021 - 47390967
Alignment:
| Q |
296 |
agataggtttcaacgttatgctaagaaccgtcctttttcttgtagacaaaaacca |
350 |
Q |
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| T |
47391021 |
agatagatttcaacgttatgctaagaaccatcctttttattgcagacaaaaacca |
47390967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 336
Target Start/End: Complemental strand, 47421837 - 47421796
Alignment:
| Q |
295 |
aagataggtttcaacgttatgctaagaaccgtcctttttctt |
336 |
Q |
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| T |
47421837 |
aagatagatttcaacgttatgctaagaaccatcctttttctt |
47421796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 198 - 265
Target Start/End: Original strand, 7171921 - 7171988
Alignment:
| Q |
198 |
aaatttactttaaaatcacagattgaagggttatttgattgatttcactccattaaagttgtatgtgt |
265 |
Q |
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| T |
7171921 |
aaatttgctttaaaatcacatattgaagggttatttgattggttttgctccattaaagttgtatgtgt |
7171988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 198 - 265
Target Start/End: Original strand, 9206658 - 9206725
Alignment:
| Q |
198 |
aaatttactttaaaatcacagattgaagggttatttgattgatttcactccattaaagttgtatgtgt |
265 |
Q |
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| T |
9206658 |
aaatttgctttaaaatcacatattgaagggttattttattgattttgctccattaaagttgcatgtgt |
9206725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 263
Target Start/End: Complemental strand, 42189361 - 42189296
Alignment:
| Q |
198 |
aaatttactttaaaatcacagattgaagggttatttgattgatttcactccattaaagttgtatgt |
263 |
Q |
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| T |
42189361 |
aaatttgctttaaattcatagattgaagggttatttgattggttttgttccattaaagttgcatgt |
42189296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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