View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_low_8 (Length: 694)
Name: NF1149_low_8
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 387 - 683
Target Start/End: Complemental strand, 41094921 - 41094625
Alignment:
| Q |
387 |
cgtacaagtttcatgcatgcatcctctgagctatctcatctcatgtttgcaccatctcctaagaatatctatgcaatttgacaaattcctaaacaacagt |
486 |
Q |
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| T |
41094921 |
cgtacaagtttcatgcatgcatcctctgagctatctcatctcatgtttgcaccatctcctaagaatatctatgcaatttgacaaattcctaaacaacagt |
41094822 |
T |
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| Q |
487 |
agatatttggcatatggaagatttgtggatcttgtctaccaaaatggtacacggtggagcatgtatgccctagtagagaagtcaaacagctaatcatgac |
586 |
Q |
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| T |
41094821 |
agatatttggcatatggaagatttgtggatcttgtctaccaaaatggtacacggtggagcatgtatgccctagtagagaagtcaaacagctaatcatgac |
41094722 |
T |
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| Q |
587 |
gataactctcaaataaaatcccaaagccactctaccctaaaaagagcacatacggccttcccctccattctcctagattcctcaatattcaccctat |
683 |
Q |
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| T |
41094721 |
gataactctcaaataaaatcccaaagccactctaccctaaaaagagcacatacggccttcccctccattctcctagattcctcaatactcaccctat |
41094625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 46 - 316
Target Start/End: Complemental strand, 41095262 - 41094992
Alignment:
| Q |
46 |
ctaatccagagatctactgtgtgctacatttattagaaatcctacatagagatatcttgtcatatggaatgcaatgcttgtaactctcaaatagacacca |
145 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41095262 |
ctaatccagagatctactgtgtgctacatttattagaaatcctacatagagatatcttgtcatatggaatgcaatgcttgtaactctcaaataaacacca |
41095163 |
T |
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| Q |
146 |
taaaatatctgtgtaggtacgtatcaacatgcatcatggaccaatattcatcaactttgagattccaatgtttatacttccactgaaatactagaggcta |
245 |
Q |
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| T |
41095162 |
taaaatatctgtgtaggtacgtatcaacatgcatcatggaccaatattcatcaactttgagattccaatgtttatacttccactgaaatactagaggcta |
41095063 |
T |
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| Q |
246 |
ccattgatttgtcaatgtctgaatctacttgattacaaactatttagaaaatattcgtaaatccatcactg |
316 |
Q |
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| T |
41095062 |
ccattgatttgtcaatgtctgaatctacttgattacaaactatttagaaaatattcgtaaatccaccactg |
41094992 |
T |
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