View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1149_low_82 (Length: 340)
Name: NF1149_low_82
Description: NF1149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1149_low_82 |
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Alignment Details
Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 239 - 335
Target Start/End: Original strand, 2833426 - 2833522
Alignment:
| Q |
239 |
aagtaaagaaaatgaatatacaaaaattctgagatgaacctaccttagtagcattgaattgaagcttaaaaacagctttaatcctattcatctcact |
335 |
Q |
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| T |
2833426 |
aagtaaagaaaatgaatatacaaaaattctgagatgaacctaccttagtagcattgaattgaagcttaaaaacagctttaatcctattcttctcact |
2833522 |
T |
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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 156
Target Start/End: Original strand, 7910756 - 7910856
Alignment:
| Q |
56 |
tttaaagattactcaaacaataaatttcatgatacaactacataacatag-acaatatatgttacatcatacaattcgcatctaagaaaccatatcctgt |
154 |
Q |
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| T |
7910756 |
tttaaagattacaccattaataaatt-catgatacaaccacataacatgggacaatttatgttatatcatgcaattctcatttaagaaaccatatcttgt |
7910854 |
T |
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| Q |
155 |
ga |
156 |
Q |
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|| |
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| T |
7910855 |
ga |
7910856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 244
Target Start/End: Original strand, 7922593 - 7922681
Alignment:
| Q |
157 |
taaatcacatacttcttcagcaaattaacatttttccgtctt-cagtttgccctccgtcatacaattatcattcaatattttcaagtaa |
244 |
Q |
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| T |
7922593 |
taaatcacatactccttaaggcagttaaaattttcccgtcttacaatttgcactcaatcatacaattatcatttaatattttcatgtaa |
7922681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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